Array 1 171266-172880 **** Predicted by CRISPRDetect 2.4 *** >NZ_QASP01000034.1 Salmonella enterica subsp. enterica serovar Weltevreden strain sg_ww19a ww19a_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171266 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171327 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171388 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171449 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171510 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171571 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171632 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171693 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171754 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 171815 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171876 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171937 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171998 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172059 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172120 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172181 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172242 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172303 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172364 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172426 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172487 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172548 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172609 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172670 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172731 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 172792 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 172853 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189388-191857 **** Predicted by CRISPRDetect 2.4 *** >NZ_QASP01000034.1 Salmonella enterica subsp. enterica serovar Weltevreden strain sg_ww19a ww19a_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189388 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189449 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 189510 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 189571 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189632 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189693 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189754 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 189815 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 189876 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 189937 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 189998 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190059 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190120 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190181 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190242 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190303 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190364 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190425 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190486 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190547 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190608 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190669 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190730 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190791 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190852 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 190913 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 190974 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191035 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191096 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191157 29 96.6 32 .G........................... AAATTAGATGATCTGGACAACTGCCCGCAATG 191218 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191279 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191340 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191401 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191462 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191523 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191584 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191645 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191706 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191767 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191828 29 93.1 0 A...........T................ | A [191854] ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //