Array 1 130704-131708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGDMO010000001.1 Escherichia coli strain EC2800 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 130704 29 100.0 32 ............................. GCAAACAAAACGGCCACGTAAAGTGGAATGAC 130765 29 100.0 32 ............................. TGGCTATAGTATCACATGATTTCTATTTGTCA 130826 29 96.6 32 ............T................ ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 130887 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 130948 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 131009 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 131070 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 131131 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 131192 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 131253 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 131314 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 131375 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 131436 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 131497 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 131558 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 131619 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 131680 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 147207-148210 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGDMO010000001.1 Escherichia coli strain EC2800 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 147207 29 100.0 32 ............................. TCTATTCACCAAAAGAGGGTGATATTGTTATT 147268 29 100.0 32 ............................. ACGTCGGCACGAATTTTACCTGCTATTCGTCA 147329 29 100.0 32 ............................. CGTGTCTCGCAACAAATAGCGGGCGTCCGTGC 147390 29 100.0 32 ............................. CCGCACCCGTCCTCGTCGGCCAGCGTCCACGC 147451 29 100.0 32 ............................. CCGCGTCTCTATTCCGATTTGCCGCACTGCGT 147512 29 100.0 32 ............................. ATCGACATGCAGCGCGAACGGCTGCCCCTCAC 147573 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 147634 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 147695 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 147756 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 147817 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 147878 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 147939 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 148001 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 148062 29 100.0 30 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGT 148121 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 148182 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //