Array 1 2-223 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCVY01000035.1 Bacillus smithii NBRC 15311, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================ ================== 2 23 100.0 43 ....................... TCATGACGATCATAAAAGCCATTTTGAAACTCTTTAGTTTTTA 68 23 100.0 43 ....................... ATTTCACCAGTATCCGTTGTTTCTACTCGAACATCTGTTTTTA 134 23 100.0 44 ....................... CTCCTTATTAACTCATATGATCGCGCATGTTACTGGCGTTTTTA 201 23 95.7 0 ......................T | ========== ====== ====== ====== ======================= ============================================ ================== 4 23 98.9 44 TTTTAACTATGAGGAATTGAAAC # Left flank : CT # Right flank : TCAAAGTATCATTAAGCCCCTAATGAACTCGGGCACTCTATAAAGTTGTTTTTTGTATTTTTATAATCGAAGTGACTAAACGAAGAATGGAACCTTTTAAGATAAAAATAGGCAGTGAATGTTATTAGAAGCTGTTGGTATAAGAGACCTGTAGGAGAGAAATGTACAAATAAAGGAGTAGAAGAAAGTAAGGTTGTTGAGAAGATACAAGAAATGGTTAGGGAGTACAGGGATGAGTTAGTTACAGCTATAAACAAAGGAGAGGGAGGAGATATTGCTAAGGAAAGAGGCAATATTAAAAGAGATTGCACCTACAGAAAGAGCTACAAAAGGAAAAAACAGATTATCGAGAGCTATGGATGCTTATGATAATGAAGATTATACAAGATGAATATTTGGAAAGGAAAGAGAAATATAAGAATCAGCAAAAAAATATTGAAAGTGAGATAGATCTTTTAAATAAGAACTGAAAAAGTTGGATGCTGTTAATGATATGGATA # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 545-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCVY01000019.1 Bacillus smithii NBRC 15311, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 544 30 100.0 38 .............................. TCACAGCAATGATCGAGAATCCGATAAGCGGTTTAACC 476 30 100.0 37 .............................. AAGCTGAAATCAACCCAAGCAGGAATCCAGAAGAAGT 409 30 100.0 35 .............................. TATCCTTCACAATACGGCAGGATTTCTGCCTCCTC 344 30 100.0 36 .............................. CGCCGACAACGCCTTTCGCTGCATTTTCGATTCCTT 278 30 100.0 36 .............................. TCCTTTGCCACGCTAGATTTCAATATACCTTCCACA 212 30 100.0 35 .............................. GGGGGTGCAAAATTTGAAATTCGAGCTCCGTTTTC 147 30 100.0 37 .............................. TATTGTAAAATGTTTAAATAATGGTGAATGCCCTGTT 80 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 36 GTTTTTATTTTAACTATGAGGAATTGAAAC # Left flank : TTATAACTGTATTTCTTTATAATCAAGTTTTTTCCTTTACAAAGAGATTGTACTTGTTGTAAATCGACATGGAATAGGGAGCGAAAAGCTGCCTATATGCAAGAATCGAGCGATGTGCCGTTGGTACGTTGTCTCGGTTCTTATTTGTTTGAAGGTAAGGCAGATGCACATCGTATAGTAAAAAAACTGTCAAAAAGGCTGATTATACAGTTAGTGAAGCGATTCAGAAGGTAGGAATCATTCACCTGTGTCTGTTCTGATGGATACTCAGTGATTTAAAAATCTCGAATCAACACTAGATGGTTGAATTCATTGAATAGCAACATATATTTTGTCGTCGACCCCTAATAGCGCACAAAACCCAGAGGATCGACGACAGTTTCTTTTACTCTTTCCTTCTTACAGCCATCAGCTATTCTCTCTATTGACGGAATTTTCGAAATGGAGTATCCTGAACTTGCCCTGCTTTGAAAATTGTTAATGTATCAATGCATTTTGGG # Right flank : CAACTACTGTCGTTCTTGCGGAATGAAACATACGAAGTTTTTATTTTAACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 51374-51213 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCVY01000019.1 Bacillus smithii NBRC 15311, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 51373 30 100.0 35 .............................. AATTTCTGACTTTCGATAAAGTCAGCAACCGCTAG 51308 30 100.0 36 .............................. AAGTACAGCTCTCCAATTTCACCAGGAGCAACCGGC 51242 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 GTTTGTATCTTAACTATGAGGAATTGAAAC # Left flank : GAAAACTCAGTTCTTTGATCCATATGACGAAGTGTTTTCTCATTTAATTGAAGTGAATTTTCGTAACAAGTATGAGGCTTATTACGGAGAACCGCCAAAAGAGCGGTTGTTGATCGAACCATTGCATGTCACTCAAAAACATAAAGTCGTTACGACTTTTAAAAACTACTATATTACTGCCTGGCTGGGGAAATTTCGCTTACAGTCATCTCCAAAAAATTTAACCTTCTTATTACAAACGGGGATAGGCGGAAAAAACTCTCAAGGGTTTGGGATGTTTCGAGTCGTGCAAGAATTGTAAAGATGAATTTGTCGTCGACCCCCAATCGTGCAAAAACTCCAAGGGATCGACGACAAAATGTGTTTATAGTACAACTAGGTAAAAATGCAGAAAATATCAGTGGTAAGAGAAAATAGATAAAATTATTCTTTTACGATAAAATGAAAAACAACAAACTCTATATTTTATGTCATCCCTTGATTTATCAACTATTTTTGAG # Right flank : TACAGACATCGGTCCGATGGAATTATGAGAACATTGGGAATGTGGTAGCCATTAACAACAAAACTTTAATTGTGCACGGGGCTGTTTTCTCAACGATTGATGTTTTTATCTGGATTTATAAAATGATGATATATTTGCGGACGATAATATGAATAGCATTAATATCAGGAATGTGGTCTTTCAACTTATTTGTTTTGGATTATTGGTGTTATTCGTTCTGTTCATCGTGTGGCTTTTCCGTTCAAATAAAAAACGCATCCGACAACTCGATCGGATTGAAAAGAAAATCGAAGAGATGGATGAACAAATTAAGAAAGGTCATAACGGACGGCAATAGTGACCGTTTTACTAAATATTGCTTTTGAACTTGAAAACGATGTACGAGAAATTAGTAACAAATCGGATGCAGAAAATGCCTTTGTATTTTCAATATTAAATACAACTAGCTTGGTAAGATTGAATTTATATGGGGGCGTTTGTGAGTAGCTAATTGTAGTATT # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1162-732 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCVY01000047.1 Bacillus smithii NBRC 15311, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1161 30 100.0 35 .............................. TACATTTTCATACATTGATCCTGGTCGCGTAGCAA 1096 30 100.0 38 .............................. TTCGATTATACAAAAAAGGCTGGAAGCGAGAAGCGATC 1028 30 100.0 39 .............................. TGCTGTTGCCCATTTCAAAGATGGCGGTTATCAATTCGA 959 30 100.0 35 .............................. AATAATCCAATACCAATAGATAAAGGAGTAAGCAC 894 30 100.0 36 .............................. TTCAATTGTTAAAGCCGAGCGAAGAAACGTCGAAAG 828 30 100.0 37 .............................. TTCGTATTTTTGGGACAATATTCGCAAGCCCTTCAAA 761 30 90.0 0 ...........................TTT | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 98.6 37 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : GATTGCCATTCCGAAGGCTGTGCAGGAACAGCATGTGATCGAAAATGCAGAAGCGGCAACGATTGAATTAACCAAGGAAGACCTAGATAAATTGGATAAGGTGTTTCCGAAACCAACTAAAAAAATGCCTTTGGATATTATTTAAAAGAACTCATTGTGGAGTTCTTTTTTGTGGAAAAATTCGCTTTCGCATCTTATGTTGCATGATGAAAATCCGCTAATTCTGAAAAAGAAAAATATTAGTCGTATATCGGCCCATCGAATGTTGAAAGAAAATAAAATTTAAAAAGTTCTCGATCTCATTGTATTTTTTGTCGTCGACCTCCAATAGCGTTTACTTCCCGGGAGATCGACGACAATTTGATTCGAGAAGAAAACAAGAGAATGGAGAAGAAAATCGAAGAAAAGAAAAAGATTGATAAACTTTTACTGTAACTTTAAAATGGAATTAACAAAAAATTCACGATTATGAAAATGTTGCTGCATCAACGTTTTTTGGG # Right flank : AAGAGAGACGAGTTTCTTAAACACTTTGATAGATAAGTTTGTGACATGTTTGCTTTGTTCAATGGAGCTATATAGTTTTTGTGTGTTCTCTGATTCATTATTCAGTAAAAAAGTGCAAAAACATAAATTGTATAATGCTAATAACAATTCAGATGTTACTATTTGAATCAGAAATTCCTTTTAAAGGAGTTTTTTAGAATACACGAATGCAAAAGATTCAAATAAATGTGACAGTTTTGCGTTGTTACACTATCCTTGACACCTCGTGCGGTGTTGTCAATAGCCGTTTTTGTAACTAATTACAGATGGCTTGATCGAACGTTTGCTTCAGTTATTATCGATTAATTGACCGGCTTTTTCAAAGCCTAATAATTTTATTCCATTGACGACCAGGTATGGCCTTTTCGGGGAAGGCATCTTACCTGTCAGGAATAAGGAAAGGATCGTTCGTCATACAAGCAATAGGGATGGTAGTAAAAAAGGGATTATTTTGAAATAAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2214-1857 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCVY01000076.1 Bacillus smithii NBRC 15311, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2213 30 100.0 35 .............................. TTGAGAACAACGGTGTCATTACCAATGCAATACGC 2148 30 100.0 36 .............................. ATTGTATTGCGGATGTCATTAGCATTGACTTCAGCA 2082 30 100.0 36 .............................. CAGAACTAACTTGAGCTCAACAGAATTTGAAGCCAG 2016 30 100.0 34 .............................. ATTTTTGACTTTCCGCAAAATTTGCTACGGTTAT 1952 30 93.3 36 ............A....T............ TTCTCCCGATCATAATATTTAAGCTCGTTAATATAC 1886 30 80.0 0 ........................CTTTTA | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 95.5 36 GTTTAAATCTTACCTATAAGGAATTGAAAC # Left flank : AAACAGAGTTTTGACAATGAGTCAGCTAAAATGGGGCATACTCAACCCCAATCCTTCTTCAACCTGCTACAGACCGACGAGTTTTTGAAACAGTAAATAGAGCGGAAAAGGCGTTGAAAATTTGCAGACAGCACATGAACTGGATTCAAAACTAAGTGTTGGAAGGAGAATTTTCACAGGCTGACTATACAAAGGTTGAAAAAAGAATGGGAACTTTTACTAGAACCTTACGAAAGTTCGGTTATTTTTTACTCCTTCAAACTCAAAAATATCTAGAAGAAACGGGATTCAAAAAAGTATAGAACCTTTACATTGTCGTCGACCTTTTAAGAGGTAAAAAACCCCGGAGATCGACGACATTTTTCATATGTAAGAAAAACCGAGAAAATGAAAGAAAAAGAAAGAAAACTAAAGAAATTTTGATTATTTGCTCCAACTAAAAAAGTTGTTTTTAAAAAACACCGTTTGCTAAAATTCCCTTAAATTCAATCATGTTTGGG # Right flank : TTGATATACTGGCCGGCGGGGAGTTTTGTTCGTTAATGGATGGATATAATAAATTTCGTATGCAATCGTTTTGGTTCGGTGAAACTTATGCCTTAGGTCTATTTTTGTGCCTTAATAAGTAAGCGGTTTCACGAATCGTTAAACAATGATTGACTAGATACATGGACGGATCAACCATTTTGTTTTGGAAGTAAGTGGAATAACTGTACGTTAACTTAGCCTCAGACTATTTACGCAGTTAGAGTAATTAGAGCCAATTTTGACAAATTTAACATTCCGTTGTTGGTGTATCATGAATATGGGAAGAATAAAGGATTCAGAGTATATAGTATAAAAAGCGGCGTTCCTTTTTCTCGCGATAAAAAACTTCAATTTTGGAGGAACATGATATGGACCATAAAACGTTAAAACCTTTTCCAAAAGATTTTTTATGGGGCGCTTCTACATCTGCCTATCAATTTGAAGGAGCATGGAATGAAGACGGCAAAGGACCGTCCGTC # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 3504-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCVY01000079.1 Bacillus smithii NBRC 15311, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================ ================== 3503 29 100.0 37 ............................. CAAGGGGAACTCTTCCCCTTGACCCCTCCCCAAAAAC 3437 29 100.0 35 ............................. GGGGCTGTCGGCTGCCGCCGAAGCAATGCTAAAGC 3373 29 100.0 37 ............................. ATTGCACATCGGACATAACCTCACTTTGCAGAACCAC 3307 29 100.0 39 ............................. GATGGAAGTTTAAGGTTCATACCACGTCCGTTGGATTTG 3239 29 100.0 36 ............................. AAGAATGAATATGGTCCCCTCATAGTAGGCAAAAGC 3174 29 100.0 36 ............................. CTCTTTATAACCCATTACCATACTTGCTGTTGGACG 3109 29 100.0 36 ............................. TTATTCAGCTTCATAGCTTTTAGGTATCCTTATTTT 3044 29 100.0 37 ............................. TTGCTTGCAAATGGAACATGTTCCCCTTTTCCGAACC 2978 29 100.0 35 ............................. AGACTGGAACGATTTTCGCTTTTACGTTGATGAAG 2914 29 100.0 37 ............................. GAGTTTGTTTGACAGTAAAGCCGGCCTTAGCCAGCTC 2848 29 100.0 35 ............................. GTGAGTGCTTTCCAACCACTTTGAAGTCCGGCATC 2784 29 100.0 37 ............................. GCATCACTGCCGCCGATTCCTTTTGTGCGTTCCATCA 2718 29 100.0 35 ............................. CTGGTAAATTCTTTTCCTTCCACATCCGCAATTTG 2654 29 100.0 41 ............................. ACAAATAGCGATTAGAAGACTGTTAGATCAAGGAATTCAAC 2584 29 100.0 36 ............................. TAAGATTAGACTCGTGATCGGATGTATCTCGTATAG 2519 29 100.0 38 ............................. AAAGAAGATCCCGCTATGTTAATCAAAAAAATAATATC 2452 29 100.0 36 ............................. TTTGGTCATTATGCGTTTTGTAGATTTGTGAGTGTT 2387 29 100.0 37 ............................. GATAATAAAAAGTCCGTTCATCTTCGATCACACCGTC 2321 29 100.0 38 ............................. GACTGTGCGTGCTCAAGTAACTGTGCGATGTAAAGAAC 2254 29 100.0 76 ............................. CAGCGCACCCCGGTCCAATACAGGAAGATCGTTTTTCCCATTGGCATATTGCAAGCTAACAGCCGGAGCATCTTCT 2149 29 100.0 36 ............................. GAAGTACGAAAATATGCGGCGGACCTTCGCGATAAA 2084 29 100.0 35 ............................. CCACGGGGGAGCACCCCCTTCACACGCGGCAATTG 2020 29 100.0 37 ............................. TTGGTTTAACTCTTTGAATATGCACGATTGGCGTATA 1954 29 100.0 37 ............................. GGGCGGAGCAACGATATAAACCGTTGGTAGAAACGCC 1888 29 100.0 38 ............................. TTGATTCTTCTTCATCATAATCAATGATTTCTGCCTTA 1821 29 100.0 36 ............................. CACCGCAACAGCTCCGACATATGCCAAAGTCACATC 1756 29 100.0 35 ............................. AAAGGTACAGCCGGTCTTGCGAATCAAGCGATATA 1692 29 100.0 36 ............................. TCGGCGTTTCTGACTACAGACGCCGGAGAAGTATCA 1627 29 100.0 37 ............................. AACCAATTAACTTTTGATATTTGGGAAGAACATGCCA 1561 29 100.0 36 ............................. ATAATAAAATCCGAACCACCCCGCCAAAAATACGCT 1496 29 100.0 35 ............................. GAAATGCTATACCGTTTTTAATTTGATTGTAAGTA 1432 29 100.0 37 ............................. GATTAGCAAAACAGGAATTAGCACGCCGTTCCTATAG 1366 29 100.0 37 ............................. TCAACTCCCCAATCTTTAGTTGCAGCATTGGATTCTG 1300 29 100.0 39 ............................. AAGAAGAATTTCAAATGAAAAGAAAAGAATATGAGGAAG 1232 29 100.0 36 ............................. CAGCAATGGCTATAACAGGGGTTCCGGCCAAATATT 1167 29 100.0 37 ............................. GGTGTTAAATCAGATTATCTAAGTAGACTTTTCATTC 1101 29 100.0 38 ............................. AAATGAAATTTTTAGGAGGTGTTGGGGATGGCGCGACC 1034 29 100.0 35 ............................. TGCACGAATTTTTAAAGTATTGGGCCGGTGAAATC 970 29 100.0 36 ............................. GTGAAATTTTAGAGGATTTAGTTCACAAAGAAATAA 905 29 100.0 37 ............................. AAAGTGTGGAGAGAATTGAAACAAAACTAGATTTACT 839 29 100.0 38 ............................. TCAATGAAGCCAATTGGTTTGATAAAAAATTGAAGTTG 772 29 100.0 36 ............................. TTACAATATTGTCAAATTTCACACGCTCAATATTCC 707 29 100.0 35 ............................. GAAGAAGGTGTCCCTTCAGCGTATCCAACATATCC 643 29 100.0 38 ............................. GAAATCAATTTGAACATCTATATCACTGGCTGATGCCT 576 29 100.0 36 ............................. ATGGTCAATATCTATTGCAACCAAATCCGACAAATC 511 29 100.0 36 ............................. AGCTGCTTTCATAATTTCATCTTTCATGTATTTCAC 446 29 100.0 36 ............................. CTTTTATAAACGTTGAAATTACCCAAGTTCCTTTGC 381 29 100.0 40 ............................. TTGGGATTGGCTATGTAATGGGAGTGAAAGCTGCTTTCGC 312 29 100.0 36 ............................. TCTTATGCGGAATATATCCAGCCGCATATTGCTGCC 247 29 100.0 38 ............................. AGGAAGAACAGCGGGAAAATATCAAAAAAGGCGTATCC 180 29 100.0 37 ............................. GGAGCCCGGGAACGTATGAGAATTCAAGACAGAGCGC 114 29 100.0 38 ............................. AAATGTCTGGGCTGTAATTCAAACAGTGTCTCAAGCGA 47 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================================ ================== 53 29 100.0 37 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : TGGACACAAAATTCTGTGTTTGAAGGGGAAATTTCAACTGGAAAATTAACGAAATGTATGTTTGAATTGAATCAGATTATTAACAAAAAGGAAGATTCCATTTACTTATATCAAGTGAATAACCCAAGAAATATTAAGAAAGTGGTTTATGGTCAAGAGAAGAATCCTTTAGATTTATTTTTATAAACGCGATTCAATGTAATAAATACAATCCATGAAATGTGGAGTCGTCTTAAATTTAAAAAAAGTGACAGTAGGATCCACAAAGAATTTTAAAACTTTATAAAAAATGTTTCTGATCTCTTCAATTGATGTTTTGCAGCGAATCTCGTTTTTATAAAAATCACCCTAATCTCTTGCTGCTTAAGGGTTTTGATAGCTTTTAAAGATCTAGTGAAAAACACAACTACCGATTTGCTGCAAAACTAATATGTTCGTCGAAACATTGAAGTATCCCTAGTCCTTGATAAATAAGGATTTTTTGAGTGCCAAATTGTAGG # Right flank : GGCCGTTCAGTCCGAAGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1150-925 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCVY01000098.1 Bacillus smithii NBRC 15311, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 1149 28 96.4 38 ...G........................ TCTTATTCTACGCTTGATGTATTTTGATTGACCACAGG 1083 28 96.4 37 .............T.............. ATGCTTTTATTGCTGTTTCTTGCAATGGATCATAAAG 1018 28 100.0 38 ............................ ATAGAATAAATTTTATTTAACCAATTCATAAAAGGTTG 952 27 89.3 0 .............T.........-.G.. | G [927] ========== ====== ====== ====== ============================ ====================================== ================== 4 28 95.5 38 TTTTATCTGAACGCAGAGGGATATAAAG # Left flank : TCCGTATAAGCTGAATTGGACGTATCGTATGATTCAAGGTGTAAGAGTTTGGAATAAAATTGATGTTGGATATATGCTGGCCGGAGAAGCTATTGAACAGTATGACTTATTATCGCTGGATTCATACGGGGATTTGGTTCTTTTTCCTTAAAAATCTTGTGTTTGAAGGAATCTATAGATATATTGGAATGGGATGAGCTTTTATGCAAATCTTTTCCGGGGAAACGATTCAAAAACATGACATGAGATACGGATATGTTTAGGAAATTTCAAGAAATTATGCCGTTCTTTTGTTTCGTTGTTGATAAAGCGAGATTGTCAATTGCTTGTATGGGCAGAAAAGTGATATGATGCCGGAATAGAGGATACGATTTTTCAAAATAAAATTCGAAACGTGAAAAAAACTTTCTTGATTGGGAACAGGTGCTTAAAACGTTTATCATTTGCCATCCGCTCCCGGCCATTCCTTTTTTAAAAAATTAGACCGGGATCAGGATTGA # Right flank : AACTCCGCATTCACGTATTGCGGCAGGGATGAAGCGAGTTTTATCGAATATATAGTAGGAAAGAGAGAGTTTCAAAAGCTGTATTTCTTTTGAAGTTTTAGGTTGTTGATTACGTTGGTTTATTGCATATGTCGTCGCACTTTTTGGCGATTAAGGGTTTCACCATTTTAAAGAAAAAGCTATGAAACGATGATTGTTATGGGATAGAGGCTATGATTTTTGCTTAATAATAAGGAAGATATTCCCTTTTCTTGACAAAGTGGAAAAATTTTCCTAAAATTTGTTCCAAAAGGAAATCCCTTTCAAAGATTTCACAGCGAATATTTAGTGGATGCAATGAAATGGAATTTTTTCTTAATCAATAACTAGAGAAAGATTAAAGGAACAACAAGCGGAAGTGTCTTATCGTTCTTTTATTCTGAATTTTCCGATTTGTTTACCAGCGATAAAAACATCCGCTTGGAAGAGAAAGGATTGGATAAGATGAGAAAACGGCTTCT # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTATCTGAACGCAGAGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //