Array 1 52193-50150 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTJ01000003.1 Plasticicumulans acidivorans strain DSM 23606 Ga0215699_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52192 29 100.0 32 ............................. GTGTTCGTTTGCGGAGTGGTGCTCGTAGGCGG 52131 29 100.0 32 ............................. GATACTTGGCGTGGTCAAAACCAAATCCCAGC 52070 29 100.0 32 ............................. ATGTGGATCACGTCCGTGAGGTAATGATTGAC 52009 29 100.0 32 ............................. GAACAGGCACGTTCTCAATAACAGTAGCAGCC 51948 29 100.0 32 ............................. CCGCGATCGATCGAACGCAGACACCGCCTAGC 51887 29 100.0 32 ............................. TTAATGTTTTAGTTGGTGTTTTGGATCGTACT 51826 29 100.0 32 ............................. CCTTGTCTGAAATGTTTTCCGATACCGACGAT 51765 29 100.0 32 ............................. CAGAGCAAAGCTGCCCTATTATCAGCGACTCA 51704 29 100.0 32 ............................. AATGGAGCTGCGCGCTGATGCGCCGGCCGGCG 51643 29 100.0 32 ............................. TGCTGGTGTGGGACATAGTATTTCCTTTAATT 51582 29 100.0 32 ............................. GCCTCCTCGTCCGGGGTGCGCGTGCCGGCCCC 51521 29 100.0 32 ............................. GTGGTCATTTTCAACTCCTACCCCTGACTCCC 51460 29 100.0 32 ............................. GCCGACATAGCGGAACAAAGCCCCCTCAATAA 51399 29 100.0 33 ............................. GCTGGCAGCAAGCGTGAGCGACTCCTGACCGAG 51337 29 100.0 32 ............................. ACACCGCCGCCCAGCATGGATTGCTTTACGCA 51276 29 100.0 32 ............................. CTCATTGATAGTGCCGTTCAGCACGGTCACCA 51215 29 100.0 32 ............................. ACCCGCACGTAACTGGTACGGGCGACCTCGAA 51154 29 100.0 32 ............................. CCGATCACCTGGTCGGCCAGGCGTATCGGCTG 51093 29 100.0 32 ............................. TCCACCGGCGCCACGGCGATAACTCCGTGCCC 51032 29 100.0 32 ............................. CCGATGCATATCAAACGCCTGCCAATGATCCG 50971 29 100.0 32 ............................. GCGAATTTCCGTAATTTGATGACAATTCATAT 50910 29 100.0 32 ............................. CGACCGCGCGCCGCGAGACTGGCAGCGACCAG 50849 29 100.0 32 ............................. CAGATTTTATATCCGCAGTATGAGGCATATAT 50788 29 100.0 32 ............................. TGTCCACAGAAACAGAACTTTCCGCTTCCAAT 50727 29 100.0 32 ............................. CCGACGTAAATCCTTTTTTGGCGGTTCCCATT 50666 29 100.0 32 ............................. ACTGTCGCCCGCAGCAGGCGATGCGGCGTGGG 50605 29 100.0 32 ............................. TGTCGCTGCGCGACGTGCAGGTGCCCGTCACG 50544 29 100.0 32 ............................. CCGTTCGCGCGGGAACCAGTTACCTACGACAT 50483 29 100.0 32 ............................. GTGCAGGCGGTTGGTTATCGGATGATGGCCTG 50422 29 100.0 32 ............................. ACGGTACAATGTGAGAGTCGGCACGGTGTGTC 50361 29 100.0 32 ............................. ACACGCACAGCGTCTGGAGATTCTCCGCATCG 50300 29 96.6 32 ...........................T. ACTTCTTGTGCCCGGATATTGTCCTGTTCCAG 50239 29 100.0 32 ............................. ATCATGGCCGCGCACGCGAAATTGCAGCCGGA 50178 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.9 32 GCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : ACGGCGCGATCTCGGTATCGGCAACACTTGCTGCCGAATTTTTAGTCATGATCGAAGACTTCGTGCTCAGTGCAGAGGGAGAGGCTTTACTGGGCGCGCAGGCTCTGGACGGTACGGTAACGCTGAATGGCAGTGGCCACATCATGACCCTGCCTACCGGCGCGTTCTGGGCACATGACCAGTACGGTGCGAGTTTTGGTGTTCTGTCGGTGCCGGCCCCGTCTTCATTAGCAGCAATCGCCGGCGGTTTACCGCTGTTGCTGACGGCCTTGTCGCGGCAGCGTCGTAGACAGGCAGACTTGCATTGAGTCCCTTACCCGCAGCCGTATATCGGCTGCGGTAGTTTTTGGCATGCTGATCTGCACATTGCCAAAATATCTTTTAAAAATAGTTGGTTGTATGATTTTTCCGCTACCGCGCAATTGCCAGAGTGCCGGTATTTACGCGGTAGATTTTTTATGCGTGTTTTTTTATATGTTTTTCATATAGATAGCTGAAGA # Right flank : ATCTGCATGGAATGCCGCTGCTGCAGGGACATTCTCGCGGTGTCACTTGGCATGTCAGCATGACAGTCGTCTTGCTGCCGGGTGCATCACAGTTGGGCTGCGCTGCTAGCCTGTACGGCTTTTCGCTTGGCCTGCTGCAGGAATCGCCTATGCGTTTGCTCAAGGATTTCTCCGTCTCCGCTGTTGTGGCGGGGTTCGTGACCGTGCTGGTCGGTTTTACCAGTTCTGCCGTCATCGTCTTTCAGGCCGCGGCCGCGCTCGGTGCGACGCCGGCGCAGATCGCCTCGTGGATGTGGGCGCTGGGTATCGGCATGTGCCTGACCTGCGTCGGTCTGTCGCTGTATTACCGGGTGCCGGTGGTCACCGCCTGGTCGACGCCGGGAGCGGCGATGCTGATCACCGGGGCGGCCGGTGTGTCGCTGGCCGAGGCGACCGGTGCGTTTCTGGTGTCGGCCGTGCTGATCGTCGTCGCCGGTTTCAGCGGCGGTTTCGAGCGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42007-38191 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTJ01000001.1 Plasticicumulans acidivorans strain DSM 23606 Ga0215699_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 42006 29 100.0 32 ............................. ACGTGTTACAGGAGCGTCCACTGCGCCTGATC 41945 29 100.0 32 ............................. CGCTGACAGCTTAGTACAGAGGTGCGTGCGAT 41884 29 100.0 32 ............................. TATCGATATGAATCAAATCAAAAGACGCTGGA 41823 29 100.0 33 ............................. GCCGTGAATCGTTCCCCCATCCCCCATCTCCGC 41761 29 100.0 32 ............................. GCTGGATGAATCGGGGTTATATCCCTGTTGTT 41700 29 100.0 32 ............................. TTAAGTATGCGGCTGCTGGTCAAAATGGCTGC 41639 29 100.0 32 ............................. ATAGCAAAAAAAATCAAACTGTGCGACCACGC 41578 29 100.0 32 ............................. TCAACCTTATCGCGCTTCTTGGCCTCAAGAGT 41517 29 100.0 32 ............................. GAACATCAACTCTAGTCCCCTGCTGAGTATAG 41456 29 100.0 32 ............................. AGAGCAGTCCACCCGCGGTGGACATCAGACCC 41395 29 100.0 32 ............................. CTATTTCGCAAGTTCGTTCTGAGGCTGCGGAA 41334 29 100.0 33 ............................. GACGCTTTAATATCTGGCATTAATTGGATTGCC 41272 29 100.0 32 ............................. CGCAGCGAGCGATCGCGTATGCGGCAGCACGC 41211 29 100.0 32 ............................. AGTCCGGTGCTATTTCTGAGGCGCGGGCAGCA 41150 29 100.0 32 ............................. AACTCTATAAACACCACGCGTGCTGTAATTGC 41089 29 100.0 32 ............................. TTTATCGCCCTTCGCAGGATGAAAAAAAAATA 41028 29 100.0 32 ............................. ATCCATCCGACAAATCACGGCTAGCAGAACTA 40967 29 100.0 32 ............................. CTGACCAGCCCGTTGACGACCGCCTCGGTATC 40906 29 100.0 32 ............................. AAGCATTTCGGTCACGCAAAGCTCTATCAATC 40845 29 100.0 32 ............................. GTGGAGGGGTTTAGGTCTTTCCCCCTCCACCG 40784 29 100.0 32 ............................. AACATTCAGAGCATAACGCCACAGATCAGTCA 40723 29 100.0 33 ............................. CGCGTGAGTCTACCGCTCAGCAGCAATTAGCGG 40661 29 96.6 32 ............................T GGCGAGGGTGGGGAATCGGTGGTAGTGGTCGA 40600 29 100.0 32 ............................. GACATTGAGACGGTATTGATCTGGATTTTTTT 40539 29 100.0 32 ............................. CCGATCGAGAGCAGCCGCCAAAGGCGAACTAC 40478 29 100.0 32 ............................. TCAGAAACAAAAGAGGGATCTAAATCAAAAAA 40417 29 100.0 32 ............................. TCAGAAACAAAAGAGGGATCTAAATCAAAAAA 40356 29 100.0 32 ............................. CAACTCAACTCTTATCGCACGAATTTTAACTC 40295 29 100.0 32 ............................. ACAGTGGAAACAGAATCAACAGAGCGGGCGAG 40234 29 100.0 32 ............................. ACGCCGAACGTCTCCTGCGGTGGCATTTCTCC 40173 29 100.0 32 ............................. CTTCGGCGCGATCCGCTCGCTGATCAGGTAGG 40112 29 100.0 32 ............................. TGAGCATATGGCGGGCCAGCCGGAGCCGGCGG 40051 29 100.0 32 ............................. ATTCTGATGATAAGGGGGGTTTGTGATGCGTT 39990 29 100.0 32 ............................. ATAGAAGCCTGATCACAAGCGAACTGCATAGG 39929 29 100.0 32 ............................. TGAGGCCATCAATACCACTATAAAAAACAGGA 39868 29 100.0 32 ............................. GCCACATCAGACGACCTCACAGTAAAAGCCGG 39807 29 100.0 32 ............................. CCTGGTGCAGTTGGTGCTGCTCCTGATGGATA 39746 29 96.6 32 ............................T GCCAATCATCTGACGTAGGCGGACAATCACGC 39685 29 100.0 32 ............................. GATCACCAATACACTGGCCTGAAATCAACTGA 39624 29 100.0 32 ............................. TTGTACCGTGCGCCCCCCTTCGATTGGCGTGC 39563 29 100.0 32 ............................. CAAATTCATGACCCCCCAACGAAACAACAGCA 39502 29 100.0 32 ............................. GGATGGAGGGCTCTCATGTTTTCGTGATGAAT 39441 29 100.0 32 ............................. ATTTTTGCGCGGCCTTTGTATTTCACGTTTAT 39380 29 100.0 32 ............................. GAGTCGGTCAACAAGGAGGCGATCCTCAACGA 39319 29 100.0 32 ............................. CGCTCATCGTTTATCCGCCTAATTGCAGCGAT 39258 29 100.0 32 ............................. ACTCCAGCCTCAACCAGCGCGCGCCAAATCTG 39197 29 100.0 32 ............................. GCATCGAGCAGCTGGCCGCGCCGGCAACAGCG 39136 29 100.0 32 ............................. GCCAATCCAGCTGTAGCGATGAAATCCGATGC 39075 29 100.0 32 ............................. GCCCTGTGAATAGGGCTATTAAGGCCGGTCTT 39014 29 100.0 32 ............................. ATCGAATCCGGCCAAATCGAACGCAAATCGCA 38953 29 100.0 32 ............................. TTGTTTAGCGCGTTGACTCAGCACGACGGGCT 38892 29 100.0 32 ............................. GGAGACCCGAGCTGTCGACTACCGACCGTTCG 38831 29 100.0 32 ............................. GTCGAGGACAACGAGACGCTGGACGCGCTCGC 38770 29 100.0 32 ............................. GCCATGCGGACCGATTCTGGGCGCTGGCGCTC 38709 29 100.0 32 ............................. TCTGGTCGAGTACATGGACGACTGGATCGACA 38648 29 100.0 33 ............................. TTTTGATTGCGTCGACGCCGCCTCCAAAAGCGT 38586 29 100.0 32 ............................. GAGTTTCCTGCGGTGTGCAGGCCCGACGCCCA 38525 29 100.0 32 ............................. CGGAATACACCGCCACCACCATCTCCAGGGGA 38464 29 100.0 32 ............................. CTGGAATTGAGCCGATAGAAGCGGGTGTTTCG 38403 29 100.0 32 ............................. TCGGGGGCGGTGGCGTAGGTCATACCAGCAGA 38342 29 100.0 32 ............................. CCCGTGCTATTAGGGTTGAATTGATTCCGGAT 38281 29 100.0 33 ............................. TCCTGAGTAATCGTGACGATTTCCAAAGAAAAC 38219 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 63 29 99.9 32 GCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : ATCCCCAACCCGGAGTCCATCGGCGATGCTGGTCATCGTGCTTGAAAACGCCCCGCCGCGCCTGCGCGGTCGGCTGGCGCTGTGGCTGCTCGAAGTGCGCGCCGGCGTCTACGTCGGCGACTTCTCGCGGCGCGTGCGCGAGATGATCTGGAACCAGGTCGAGAGCGGCCTCGAAGACGGCAACGCGGTGATGGTCTGGAGCAGCAACAACGAATCGGGCTTCGACTTCCTCACCCTCGGCAGCAACCGCCGCATCCCGGTCGAGCTCGACGGCCTCAAACTGGTCGAATTCCTGCCACCACCCGCCGCCGACCCCGGCTAAGCGCCCCGTGCTCCGGTGGCCACCGCGGCACCGTTCTGGTGCTCAAGGTGTATTTCTTTAAAAATCAGCCTGTTGTATAAACTCCCGGCCACCGCATGAACGCCGCCGGTTCCGGCTTTTGTTCGGTGGATTTTTTACCCGCTTTTTCCGCCTTGTTTTTCAATGAGATGGAGGAAGT # Right flank : CCGAATTCAATGAATTTCATGTATTTGTCAGGTCCCGGCTGATTCCTGACCTGCTTTCTGAATAATTCCGGCCTGTTTTTCTGCCACTGCTTCAGCGCCTCGAGCGGTGTCACATGACCCAGCGCTTTCTGTGGAATGCGGTAATTGTAGAGCCACAGATAACGCGTCAACGTGCTGTGCAGATCCGCGCCGCTGACAAAGCGCGTGCCGGCGAGTACCTCGCTGATACGCCCGTTGAAGCGTTCGAGCATACCGTTGGTCTGCGGATGCCGTGGCGGGATCAGACGGTGTTCGATCTGTTGCTGGCGACAAACCTTGTCGAAGACATGCGTGCCGCTGGGGTCGCGCTCGCCGGTGGCGCAGAAGCGGTCGGTGAAGGCCTTGGCGTTGTCGGTGAGCACGGTGCGCACGTGGAAGGGGGCGCGCTCGTGTACGCGCGTGAGAAAGCCAGCGGCCGTGGCGGCCTTCTGGTCATCGAGCACTTCCAGGTGCACCCAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 81718-84956 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTJ01000004.1 Plasticicumulans acidivorans strain DSM 23606 Ga0215699_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 81718 36 94.4 36 ..A.T............................... CAACCAGCAGGACGTGAACCTGGAGGTTTGGCAGGC 81790 36 97.2 40 ...............T.................... GGGGCTGACGGCAGACCTGAACAGAATGAAGAACGAGTGG 81866 36 100.0 37 .................................... GCGCTGCCGTGACGGTGCCGCCACCGGCGGCCGAGGG 81939 36 100.0 35 .................................... TCGGTCACGGTGCGCAACAAAACCAACGAGATACG 82010 36 100.0 38 .................................... CTGACCAATCGTGACGCGATCAGCGAGCGCTGGGCGCT 82084 36 100.0 36 .................................... TGCATGATCACTCAGCGGCGCAAAGGCATCCGCGCC 82156 36 100.0 35 .................................... GCCGCGGGTCACATGCTCGCGCTCGCCGGGACCAG 82227 36 100.0 38 .................................... CGAACAGCATCACGCAGATGGTCCGGGGCAAAGTGCGC 82301 36 100.0 38 .................................... CGCGGCAGCGACGGGGCCCTGAGCCTCGACGTGATCGT 82375 36 100.0 37 .................................... ACCGAGTTTTACGGGGTCAGGGAGCCGTCTTGAGCAA 82448 36 100.0 37 .................................... ACCGAGTTTTACGGGGTCAGGGAGCCGTCTTGACTAA 82521 36 100.0 39 .................................... CAGGTCCTGCACCTGCAGCCGCTTGGTAGGCGCCACGAA 82596 36 100.0 37 .................................... GTGATTGCGGAGATCCCTGCAGAGGTGGCGAGAGATG 82669 36 100.0 37 .................................... TGCTCGTGCTGGACGACGCCGACGCGCTGGCCGGGCG 82742 36 100.0 37 .................................... AACGCGAGCAGGGCGCGCGTTGGATGCGAATTCATGA 82815 36 100.0 37 .................................... TGCAGTTTGTTGTGCACAAAAAGCTGCGCCCGGTTAG 82888 36 100.0 36 .................................... CCACCTCACTGACGTCGTCGGCTGCTGGCAAATGCC 82960 36 100.0 37 .................................... ACCGTCATCCGGCAGATCGTGTCGAGCGTGACGCCAG 83033 36 100.0 37 .................................... GGCGCTGCCAGCTCGTCACCGGCGCACACGACGCCGG 83106 36 100.0 37 .................................... TCTTATCTCCTTGTACGTGGTTTTTGATGGAAGCCGA 83179 36 100.0 37 .................................... TGTTGGAGAGGGAACTTTGTGCTGGGTCTTCATTAGT 83252 36 100.0 37 .................................... GGCGCTGCCAGCTCGTCACCGGCGCACACGACGCCGG 83325 36 100.0 37 .................................... GCACGACCTGGGCGTACACGGACCTGACCTGCACGGA 83398 36 100.0 37 .................................... CAGGTTCGCCAGGGCACTGCGTGCCACTGCGACCCAA 83471 36 100.0 36 .................................... CTTCGAGAGGTATTTGATCGGGTCGACGCGACCGCC 83543 36 100.0 36 .................................... AGTGATGCGCGTCGACCTGGTTGATTGACTCAGCCT 83615 36 100.0 36 .................................... ACGCGCCAAATAGGCCGATAAAACAACACTCAAACC 83687 36 100.0 36 .................................... GGCATACATCGTGCTGGCCAAGTCTGGCTATCCTGA 83759 36 100.0 38 .................................... CAACCCCCCCAAATAAGACAGCGCATCCAAATCCTTTT 83833 36 100.0 38 .................................... AACGATTGACAGCTGGAGTGCCGGCGGTGGCAACAGCG 83907 36 100.0 37 .................................... GTGTTGCGTGACGATGGCGCCGGCGGCATGGTCGCCG 83980 36 100.0 37 .................................... CTCGACAGCTACAGTTCGCCGAAGCCGACCGAGATCG 84053 36 100.0 36 .................................... GGCGAGGGGATCAGCGGCACGGTCAGCGTGGCCAGC 84125 36 100.0 37 .................................... ACCCCAGGAACGGGCCGACGAGACAACCAGACCGCCA 84198 36 100.0 37 .................................... GACGCGGACACCGTATATAAAACACAGCGCCCAAATC 84271 36 100.0 36 .................................... GCCCGGTGCAGCTCGATGCTGCGATTTGGAGCGCTT 84343 36 100.0 36 .................................... GAGCGCTTCAAGCGCGCGTCTCAGTGCTATTCGACC 84415 36 100.0 37 .................................... TTGCTGCGCGGCCGTCCCGCGTCCGCGCAATATCAGG 84488 36 100.0 36 .................................... TGCGCCCATCCTCGCCTACCAAATGACCATGCTCTG 84560 36 100.0 35 .................................... CTCGTGCTGGACGACGCCGACGCGCTCAGCGGCCG 84631 36 100.0 35 .................................... GCACGTCGAGCCCCCAGCTTAAACCGGAATCCAGC 84702 36 100.0 38 .................................... CTACCCGCGCCTCAGAAACCGCACCCACCTCATCCGAA 84776 36 100.0 36 .................................... TACGCTGCCGGCCGTGCTGGCGCTGGCGAAGGCTGA 84848 36 100.0 37 .................................... CCCACTTTATCGCCATTACCATTTGCATCCGTGCCAT 84921 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 45 36 99.8 37 GCTTCAATAAGGCCGCGGCATTACGCCGCGGATAAC # Left flank : AGCGCTGGGGCGCGGTGATGTTGATCGACGAGGCCGACGTCTACATCAAGCGCCGCGACGACAACATGACGATGAACGCCGTCGTCGGCGTATTCCTGCGCGTGCTCGAATACTTCAACGGCCTGCTGTTCCTCACCACCAACCGCATCGACGACATCGACGACGCCATCGTCTCGCGCTGCATCGCCCTGATCCGCTACGACCCGCCGGACACCGCCGCCCGCTGCCGCATCTGGGAAGTCATGAGCGAACAGTTCGAGCTCGGCCTCGCCCCCGCCCTGATCAGCGAACTCGCCGAACGCTTCCCCCACGCCACCGGCCGCGACATCAAGGGCCTGGCCAAACTCACCGCCAAGTTCTGCCACCAGAAACAACAGCCGCCGAGCATCGACGCCTTCGTCAAATGCTCCATCTTCCGCGGCATGGAGCGCCCGGCACAGACCGCGGAGGCGTAAACGCGGAGCGGGAAAGAGGCCGCGGCGTGATGCCGCGGGCAGCGT # Right flank : CGGACCGCTCGAAAATCCCTGTGCTGCCGCAAGCTTGCGTGCGGGTTTGCGAGCGCTGCCAGTTTGCGCCGGCAGTTTGCCTCCGGCAAGACGGGAAGTGCCGTGGACCATGTTTCAAGTGCCTGATTGACAAGGAGCATTGCGTTTGCGAGCGCTGGCCGGCCCGGGCGTGGCATGGCAGCGCTCGCGGGGCGCTGGTCAGAAGATCGCCGGGCCGCGCTCTATTGGAGTGTAGGGCTGACCGAGGCTGATGACGCGCGGGGCGATGCCGTCGGCGGGGCCCATGTCCATGAGGATGACATGGTCGCGCTGGTGCAGGATCAGGTTGTCGAGCAGTTGCACCAGCTCGGCATGGCGCACCGCGTTCAGGCGGCACTGGAACACCGACAGCTGCACCCAGTCGCCGAAGCCTTTCATCAGCCGGAACACGCGCCGCCAGCGCTTGGTGTCGCGGATGTCGTAGACGACGACGTAAAGATGTTCGATGGCCATGGCGATCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATAAGGCCGCGGCATTACGCCGCGGATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.10,-14.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 229870-228818 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTJ01000004.1 Plasticicumulans acidivorans strain DSM 23606 Ga0215699_104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 229869 37 100.0 38 ..................................... GCCGCCATCGCCAGCGACATCAGGCCGACCATCAGGGC 229794 37 100.0 34 ..................................... GCCTCGGCACACGGCCAAAATCTCATCGACGCTC 229723 37 100.0 35 ..................................... GGATACGTCAGCGTCGATGTCGCCGCCTGATTATT 229651 37 100.0 37 ..................................... CACATCGGCGCTGCGCCGCTGCTGCTGCAGTACGTGC 229577 37 100.0 35 ..................................... GACAAACATACTGGATTAATTGATGGCGGCGGTAT 229505 37 100.0 36 ..................................... TCCGCATTCGGCAGTTTGTCAAAATCTGGAATTATT 229432 37 100.0 34 ..................................... CAGTGTCATCACTCACATCCTCATTTTTAATTAA 229361 37 100.0 35 ..................................... TTTGATCCACATCGTCAACCCGCTCCGTACTACAA 229289 37 100.0 37 ..................................... AAAGGCGACTTTCAGGCCGTCAACAAGGCGACCGGGG 229215 37 100.0 35 ..................................... CTGATCACGATCCAGCCGGGCGGCGGCGCGACTTC 229143 37 100.0 37 ..................................... AAGGCGCTGGTGCTCTGGTGCCGATCATGAACCCGGA 229069 37 100.0 35 ..................................... ACTACAACGAGCACGTATCCATCCTCTACACCGGC 228997 37 100.0 35 ..................................... AGCTCAAGGCCGAGCGTGAAGTTTGGACGTGGCAA 228925 37 97.3 34 ..........................T.......... ACGTCCCTCTGGGATATGCCGACGTCGATTACCA 228854 37 83.8 0 ........A...C...........G.........GCT | ========== ====== ====== ====== ===================================== ====================================== ================== 15 37 98.7 36 ATTACTCCCGCCTGAAATGGCGGGAGCGGATTGAAAC # Left flank : AGCGCTAAGCGCGGGAGGCTCCATGCTGATCCTCGTGTCCTATGACGTTTCCACCGAAACCCGAGAAGGCCGACGCCGACTGCGGCGCGTCGCCAAGGTCTGCCTGAATTACGGCCAACGGGTGCAGAAATCCGTTTTCGAATGCAGCGTCGACCTCGCCGGCTATGAATCGCTGCAACGAGCATTGCTGGCAGAAATCGATCTCGACGCCGACAATCTGCGTTTCTACCGCTTGCGCGAGCCGCTGGCCCAAAGCGTCAAGCAATTCGGCACCTTCCGCAGCGTCGACTTCGACGCCCCATTAATGATCTGACCATGCCCTGCGCGAACCCCAAGCTCCCGCCCTTTCGCCGACCGGTTCGCGCAAGCACCAACTCTTTGAAAACATGGATATTCATCAGGCCACTCCCAATGGCCGCCCAATCGATACACCGCCTCATCCGCCGATCCGCGCAAACCGCCCGAAATCGGCCGGCCAATCAGCACATTGGCGCAATGCC # Right flank : CGACTCCGTTGAGGGCCGTCGCATTTGCTGCCAAGAAAGAGGACGACGGCTCACACGGGGTAGGCAAACCGGGGCGAGGAACAGGCAGGCTCGCAAGAGCCGCCCCGCGCGAACCGCCATAGACGTACAGTGCAGGCACAAAAAAACGCCCGTAATGGAGAAAAATAGCGCTATCGCGCCTCGACAAACCCGGTCGCCGATGGGCAGCGACGGGGCTACAGTAGGCATGGTTGATTGTGCGTCAAGGGGGCTCAGATGTGGCGCCTTTTTGTTTTAATCCTGCTTTTCGGCTGTGCAACTACGACTTTCACGTCGTATGTTGGAGATAAAAATATTTATCAAGGTTCTGGGGGCGCACTGGAAAGCGTTGAAGGAGTCGATGTTTGGTCCCGCGGCTTGCCTAATAGGAAATTTTTCATTGTAGGATTTATTGATGATTCAAGACCGAAAGGCATGACAGCCGTAAATCGCAAAAAAGATCTGGCCTTGCTAGCAAAACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACTCCCGCCTGAAATGGCGGGAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.40,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA //