Array 1 58385-57623 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXS01000013.1 Neisseria elongata strain C2013010062 C2013010062_S35_ctg_2405, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 58384 36 97.2 30 T................................... AAAACAGCGGCGCACTAAACCTATGGTACG 58318 36 100.0 30 .................................... CCCATCTAAAGAGTTCATGCAATGCCGCGT 58252 36 100.0 30 .................................... AGTCAGCACCGCCTCAACTGCATTGGTCGC 58186 36 100.0 30 .................................... TCTTACGGTATCGGTAAAGTACAGGCGCGG 58120 36 100.0 30 .................................... AATCTACATCACTACAAAATGAAGAATGGG 58054 36 100.0 30 .................................... GCCCGTATAGGTGACGAAAGAGAGGCCTAA 57988 36 100.0 30 .................................... TTGGTGAAAACACCATCCACCAAGACCATG 57922 36 100.0 30 .................................... CGTGCCGCGCACGCGGCCGATGTGGGCGAT 57856 36 100.0 30 .................................... CCGTCGGCGATTCCGTCGCCCGCATTTTGG 57790 36 100.0 30 .................................... TACACGCCGTTGAATTGGGCCGTACCGTTC 57724 36 100.0 30 .................................... AGCTGCGCCCTCTTGTGCATCAGAAAAACC 57658 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.8 30 GCTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AAAATCTTCTTCCTTTATATTAAGATAATCAGCCTCACTCCCCATACCTATGCTCGCACTTTTTCAGACGGCTTGATTTTAAGCTGTAGGAGACCTTTGCAAAATCCCCCCAAAATCCCCTAAATTCCCATCAAGACATTTAGGGGATTTTGGGGGGATTTTGCAAAGGTCTCTATTTATCGAAAACCCGTTATGTGGTCGAACAGAGCTTTGGTACGCTGCACCGTAAATTCCGCTATGCGCGGGCAGCCTATTTCGGGTTGATTAAAGTGAGTGCGCAAAGCCATCTGAAGGCGATGTGTTTGAACCTGTTGAAAGCGGCTAACAGGCTAAGTGTGCCTGTTGCTGCCTAAAAGGCGGCCCAGATGCCTGATTATCAGGTATCCAAGGGGGATTAAGGGGGGGGTATTTGAGTAGAATCAGTGGATATTTGAAACAAAAACAGCCGAAAATCTTTAATTAGATTTCGGCTGTCGGGAAAAAGGAATTTTGCAAAGGTC # Right flank : GCCTCAGCGGGGAATCCTTATTTTATAAGGATTCCCCGCTTTCTTTTGTCTAAAAAACGGAGATTAGAACAGCAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTGAGTTCACCTAAAAGCAGTTTCATGGCGGCAAACTGCTTTTCTGTTACTTCCAAACAGCGTATCGAGCCTTCTTGCGGCAGGTTGGCGCATAGTCTGTTGTGGTGTTTTTGTAACGCATCTCTGCCTTTAACAATCCGGCTGTATACGGAAAGTTGCAGCATTTGATAGCCGTCTTTCAATAGGAAATGTCGGAATTGGTTGGCGGCTTTGCGTTTGGCGACGGTGGTAACCGGCAGGTCGAAAAAGACGATAATCCGCATAAACTTTGCCTCACTCATATTGATATTCTTTCAAAGGCAGGATTTCGGGCAGTTTCAGCAGTTTGACGTTTTTGGCGGCGAGGCTTGGCTGGAATGAGGCCATCATTTTGTCTATGGCTGCCAGTGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 184627-187103 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXS01000002.1 Neisseria elongata strain C2013010062 C2013010062_S35_ctg_2383, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 184627 33 97.0 34 T................................ AGATGGTCAATAGTCTCTTGTGAGATTTTCATTT 184694 33 97.0 34 C................................ CTGTTATTGTGTGTAATTTATTTTTGTTTCGATA 184761 33 97.0 33 A................................ GCCGATGCGGATGACGAATACGCCGTCGCCGCG 184827 33 97.0 33 C................................ CAGCAAATTTTGAATATTACACCTGTGAAACCT 184893 33 100.0 33 ................................. TTCGCGGTTTTTTCTTTGCCTTTGCGCCAACTT 184959 33 100.0 33 ................................. TGAATTACTTAAAGTATTACTTAATACTTAAAA 185025 33 97.0 33 A................................ AGCACCTTTATCTTTGTCAAAATAAATACAGTT 185091 33 100.0 34 ................................. CGACTATAAATGGGACAAATTCCGACTATAAATG 185158 33 97.0 32 C................................ TGTTGGAAAACCGCTTAATTTTGCGCGTATGC 185223 33 97.0 34 T................................ AATTAGTAAAATGCAGGCAAACTATGATGCAACT 185290 33 100.0 32 ................................. AATACATCCCATCCATGATGTACATTGATGTG 185355 33 97.0 33 A................................ TTCCAAGTGAATAAATGCAGCAACAGGTTCATG 185421 33 100.0 33 ................................. TTTCCAAGACAAATAACGCTGCTTCAGACTGTC 185487 33 97.0 33 T................................ ATATCCATGTTGCTGGAGTAATTGCGTAATCGC 185553 33 97.0 33 C................................ AGCCGATCACGGTCAATCAGCGTGAAGACGGTA 185619 33 97.0 32 C................................ ACGCTGAATATGTTTTACCAACGGCGCGGCTA 185684 33 97.0 33 T................................ AGCCTATTTGTGCGGGGTTTGCACCATTTGTGC 185750 33 100.0 33 ................................. CAAATGTGGCTGTTCGGCACGGCAACGCGCATC 185816 33 100.0 32 ................................. TAAAACCACTTGAGAAAATTCTTACAGAAGAA 185881 33 100.0 32 ................................. ATTTTTTCGCCGCTTGAATCCAGCCATCTTGA 185946 33 100.0 36 ................................. CGAAGGATGCTGAGTGTGATCACATCGTTCCGCTGG 186015 33 97.0 33 C................................ AATGTCCAAACTTTTTGAACTGCCTAAACGATA 186081 33 97.0 34 C................................ TGCACTGTCACCCGATTCAAACACACAACAGGAA 186148 33 100.0 33 ................................. AGTCCGAAAATACTTACGCAAAGCTCCCGCATG 186214 33 97.0 33 A................................ TGCTTTCATCTTTGTGCCACGGCTCCGCTTTTA 186280 33 100.0 33 ................................. TACAGTTATTGACACAAGTCCAAGCGGCGGCTG 186346 33 97.0 33 C................................ TTCGTAAATTTGGTTGAAAAAACAATCAGCTTT 186412 33 100.0 33 ................................. TCATGATTGTCCTGGTGAAGTTGTGCCTGATAA 186478 33 97.0 33 A................................ ATGTGTTTACCTTTGTCCCGAATTGCGGCGGTG 186544 33 100.0 33 ................................. TTCTGCTTTGGTAAATTTGGCTAACAGGCGGGA 186610 33 97.0 32 A................................ TCCATCCGCCATAAACGGATGGGGGATACCAT 186675 33 93.9 34 C............A................... GCAAACAATTCCGACTGCAACAGCGCGTTTTCGT 186742 33 93.9 33 A............A................... CAAAGCGGCCTCGGGCGTCGTTCCGCCGACATA 186808 33 97.0 32 .............A................... GACAAGCAAGACCAACGTTGCCTGTTCGGCGA 186873 33 93.9 35 C............A................... TACCGCTTGAATCAGAAAATTTGCTTGTTGCTCGG 186941 33 93.9 32 C............A................... ATATCAATATCCTTTAGTTAATGCAATTTTTC 187006 33 97.0 32 .............A................... ATCCACCGCCTGATGCAGCCTGCCGGCAATCA 187071 33 93.9 0 .............A..................T | ========== ====== ====== ====== ================================= ==================================== ================== 38 33 97.6 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCAGAAGGACAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGTGTGCGCGTACAGTATTCGGTGTTTGAATGCGACATCGCGCCCGACCAATGGGTTGTTTTAAAAGACAAACTCTTAAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAGCCGGCAGTAGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTTCGGTTCTCATGAAAATGCTGCAAGGTTGGCGAACTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGTGGGTGTAACGGAAAAGGCTGTGTTATACTCGCTTTCGCGCTTTTCTTGGGAGCTTGGCGAAGTCGGGGCTGCGAAACCTGACGGAGCAAGGCTTTTGAGAGAGGC # Right flank : TTCTGAAGTGGCGTGAAAATGTATTGGCAGCTGTATATTAAAACGATCGCCACCTCCTGTTTCGAAGAGGTGTCTTGATCGACCGCATCCAAACAGCCATAACCAATAAATATCCTCGCTGAAATGATCTGCTGCTTTGTCAATATTTGAGGCGGTGCGTATAATCCACGTTTTTATCACTACCGAACGAGGGGATTCGTCATGAGCGAAATCCAAATTGAGAAAAAAATGAATGTCGAGAGCTTCAATCTCGATCACACCAAAGTAAAGGCCCCTTATGTGCGGCTGGCCTGTGTGACCGACGGCGATTTCGGCGACAAAATCTACAAATACGACCTGCGCGTCTGCCAGCCCAATCAAGACCATATGGAAATGCCTTCCCTGCATTCGCTGGAACACCTGATGGCCGAATTGTCGCGCAATCATTCCGATAAAATCGTGGACATCAGCCCTATGGGTTGTCAGACCGGTTTCTATATCGCCCTGTTGAACATGGGTGA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //