Array 1 421624-423482 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZQ01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain D2421 NODE_1_length_547472_cov_102.222198, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 421624 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 421685 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 421746 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 421807 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 421868 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 421929 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 421990 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 422051 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 422112 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 422173 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 422234 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 422295 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 422356 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 422417 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 422478 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 422539 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 422600 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 422661 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 422722 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 422783 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 422844 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 422905 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 422967 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 423028 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 423089 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 423150 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 423211 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 423272 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 423333 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 423394 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 423455 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 439615-441219 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZQ01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain D2421 NODE_1_length_547472_cov_102.222198, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 439615 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 439676 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 439737 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 439798 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 439859 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 439921 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 439982 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 440049 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 440110 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 440171 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 440232 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 440293 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 440354 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 440415 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 440476 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 440538 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 440599 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [440641] 440641 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 440702 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 440763 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 440824 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 440885 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 440946 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 441007 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 441068 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 441129 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 441190 29 96.6 0 A............................ | A [441216] ========== ====== ====== ====== ============================= ====================================== ================== 27 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //