Array 1 45611-47626 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNFO010000002.1 Streptococcus salivarius strain D40t1_170626_E6 NODE_2_length_225751_cov_25.8725, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45611 36 100.0 30 .................................... CATCAAAGCTGGTACTTTGGTAGCTGGGAA 45677 36 100.0 30 .................................... ATTAAAGAAATAGCCATTTAAAATTTTGTC 45743 36 100.0 30 .................................... ACCACATCACCCCTAACTTTACCAATCCCG 45809 36 100.0 30 .................................... CTATGTCGATGTCTGAATTAGCTAACAAAG 45875 36 100.0 30 .................................... AGTCTATGCTATGAGAGTTTATTTTGTTAA 45941 36 100.0 30 .................................... ATAATGAGTTACAGATGTAATAATGATGCG 46007 36 100.0 30 .................................... GCAGTCTAATAAATACGCGGTTGTACCAAT 46073 36 100.0 30 .................................... TATGGGCACTTTTACTTGACAACTAAGTGA 46139 36 100.0 30 .................................... GGTAGCTGATAGCCTTACATAAATAAAGAA 46205 36 100.0 30 .................................... CCTAACTATGAAGTAACACCTACTCCTTAC 46271 36 100.0 30 .................................... GAGCAAACTTTGGCGTGACGTGCACGTAGA 46337 36 100.0 30 .................................... CTCTTATAATCAATTTCTAAATTTTGTAAT 46403 36 100.0 30 .................................... CAGTGAGTAGTTGCCACGCTCTGCCACGTT 46469 36 100.0 30 .................................... ATACGGAGCGATTGATTATGCGAACGCTCT 46535 36 100.0 30 .................................... CGCAGGTAGCGCCTCGGGAGGCGACGGCTC 46601 36 100.0 30 .................................... ATTTCAATGTCAGCCAATTTCTCACAATAA 46667 36 100.0 30 .................................... TACAAGATGAATTTCGCACCATTGGCATTA 46733 36 100.0 30 .................................... AACTGCAAATCCATCGATTGAGTAGCCAGT 46799 36 100.0 30 .................................... GAGTAGTAGTAGCGCTTTGGCAGGTGTAAT 46865 36 100.0 30 .................................... CGTGCTATACTTATAGTAGATAAATAAGAA 46931 36 100.0 30 .................................... CTTAGAAATGCAGTTCTTTGTTGAAATGAA 46997 36 100.0 30 .................................... TTCTAACATGGCGTCTGCAATTAACATAAA 47063 36 100.0 30 .................................... AAGCAAGGCGATAGAACCGTTAATGCTACA 47129 36 100.0 30 .................................... TGCTGGCTCAGTTTGGGATACCATGAAGAA 47195 36 100.0 30 .................................... GTGTCAATCAACGTTACATAATTTAGGACA 47261 36 100.0 30 .................................... AAATAATTAATTAAATAATCAAGAAGTGGT 47327 36 100.0 30 .................................... CAAAAAACGCACCAGACCCCGTAGAGCTGC 47393 36 100.0 30 .................................... CGGTCTAGGTGCTGAAATCGTGGCAGTCTA 47459 36 100.0 30 .................................... CGGTCTAGGTGCTGAAATCGTGGCAGTCTA 47525 36 100.0 30 .................................... TGAACTAATTAAGACGATTGGAGAACACAA 47591 36 80.6 0 ............CC...............T..CCCT | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.4 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAGAGAATTTTGGTGTTCGTCAATAGTTTGTCGTATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTGATGTATTATTTTTGGAACCTAGAAAGATTAAAGGTATTCAACAATTTATTTTGGATAAGGATTACATTTTGATGCCTTACAATAACTAGTAATTTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTACATGAAGTTGAGTGGAAGAATCATTTTGTTAGAGAGTAGGTTATAAGCTATCTGATAGGTGAGAAGGTAAGTTGATTGGAAAAAGATTTCTAAAATTTTTTCGATATAGCGACAGCTCTATTTGTTAAAACGTTGTTATATAAGGCTTTTTAAGGTATAATAAACATAAAAATGGAATCATTTTGAAGCTGAAGTCAGGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAGAAAAATGACCTACGAG # Right flank : TCTCTTTGTAACGATTTTGGGTTGACTTCTCCTTAAACTCATCCTATCATAGAGGAGTCTAGTATTGAAATGGGGGAAGAGACATGTTATACGAATATCCAGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGACTTTGGCCGTAGCATTAGGGCAGATTCTTTGCCTCTTGCCATGACGAAAGCATCTGTGTTTTTATCACATATTATTAAAAGGTATGGAGATAAGCCTTTACCAGAGCCGACTGCGGTTAGCAGTATTCCTAATGAGGAAGAACTCGTCGTTTTGATTCAAACAGAGCTTGATTAAGACTAAAAAACTCTCGGAAGATTAATTCCCGAGAGTTTTAGGTTTTATTGGCCACATAGACGCCCAGGACGACTAAAATGCCTGCAAAAATTTGTAGCTGCGAGAAGGGTTCTCCTAAGACGACAACAGCAGCTAGAATTGAGATAATGGTCGAAATCCCAATAAAGGATGCTGTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //