Array 1 19226-18999 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMDR01000022.1 Clostridium tetani strain 3483 contig_0023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 19225 30 100.0 35 .............................. TACATACGGCTGGTAACCCACTGGCATTTAATAAA 19160 30 100.0 36 .............................. TAGTTAGTCCAAATAACTTCTACTCTTTCCTTTCCC 19094 30 100.0 36 .............................. GGTCTTTGTATTCCTATAACTTGAATTATTCCTGCT 19028 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 99.2 36 GTTAAGCTTTAACATGGGTTAAATAGAAGC # Left flank : TAGCAAATATCAGCTTGTACAAGGCTACCTTGTTATATTTATTTTATAGTTAAATCCCCTTATAATAAATTTACTTTCTGCAATAGAATAAAAGAGCCAGGACTAGTTCTTAAAAGAATTTGCCCTGGTGGCTACTTATTTTTATAATTTACTATTGTTACACTAGCTTATATCCATACTCATAATGGACTTCCCAAAATAAAGAATATATACTTGTCCAATACTTCTACTTTAATTAAATATATAATATTTTCATTTGTATTATTATCCTTATATCTATACATAAAATAATAGTATATACATAAAATATAAAAACAGGTTGACTTCCCAACCTAAGATTGAGAAGTAAGATATGAAACCTATTGATTTTCAATAGGTTAAGCATCCTAAACTCTCAATAAGCCCACCAATCATAAACGGCTGGTAACATTCTATAGGTTTGCTTGATATAGCGGGGTTTATAGATATTTGACCTAATTGAGAATGCCTATTTTACAGTG # Right flank : CATAGGTTCCTTAAAATATAATCTTTTGCAAAGTGGTGTTGTATAATGAATAAATGTATTAAAGTAGAATTAAAATCTTGTCTTGAAAAAAATTTGTCCAATAAACAATCACAAAAATTTTTAAAAGACATTCAATATCTATCATGGAAAGGTTGTAATAGAGCTATAACTTATTTATATAATCATGATATGAAAAACTCAGAATTAAAATACAAAAATCTACCCAAAATTGATCCTAATAAAGAGTATGGTAAATCACTTGGTTCTTGGATAGAGGATAAATTAAAAGAAATTATGGTAGGTTGTTTAACTACTAATGTTGCACAAACAAGAGCATTTGTAATGAATAGATATAAGCAGGATAAAAAACAAGGATTACTTAAAGGAAATGTAAGTTTATCAAACTTTAAAAGAAATATGCCAATAATTATACATAATAAAGCATATAAAATAATAAAAGATGATAAGGGTTATATAGCTGAAATAGGTTTATTTAATTT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCTTTAACATGGGTTAAATAGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 6476-6323 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMDR01000027.1 Clostridium tetani strain 3483 contig_0028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================== ================== 6475 23 95.7 41 ......A................ TTAAATGAGTGGACATCTGGGGAAGCAGAACTTAACGTAAG 6411 23 100.0 43 ....................... TTAAATGTAGATTTGTTGTACATATATTTAAGTTTAAAATCCA 6345 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= =========================================== ================== 3 23 98.6 42 TTGAACCTTAACATAGGATGTAT # Left flank : GACTTGTAACTGTTATGGTTAGAGGAGATGTTGGAGCTGTTAAGGCTGCTACAGATGCTGGAGCTGCTGCTGCACAACGTGTTGGAGAATTAGTGTCAGTTCATGTTATACCACGTCCACATTCTGAAGTTGAAGTAATTCTTCCATCAGCTAAAGAAACTGCAAAATAATATTTTAATTAAAGCGTAAAGCAAAAAAACGTCGCTAAAATTTTTTAGCGGCGTTTTTATTTTTGAAAATATAATCGTCAATGAAATAAATATTTAAAAATGTACAGATCCTTTTAAATTATATAGAATTATTGATATAATTAACATATGAATTTTACCAACCGAAAAGAATTTTAAAATTTAGCTTAATCGTTGATATATAAGAGTTTAAGGTAGGTTTTTATATAATTTATAAAATTTTAAAATCACCTGGTAAATTTTCAATGAAACCTTGAAATATCAATATGTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTGG # Right flank : GCCCCAATTTTTTCTAAATATCTTATTCTATTAGCGTCTTACCACCGTGCAGTTCAGTATAACAGTAAAAGGATATGATGGATTTATAGCAGAGTAATGTTAGAGGTAGTTTTTAGCTTAGGCTAGGAGCTACCTCTTTTTTATTGTTGTAAAATGTATAATAATATAATAAATATTTACATTTAGTCCTATATTGTACTATAATGTAAATAATATTACTAAGTATAGGGGGATTTAAATGAAAGCTTTGACTAAGATAGGTAAAATACTTGCAATATTAATAATTTTATCCATTATAATTGCTATATCACCAAAGCTTGGGTTCATAGTATTTACAATAGTTCCAATAATATATTTAATCTATCTATTCAAGAAAGGACCTAAGTTTAAGAATTATAATTTTTTACTAAAGGGGTTAATTAGTTTCTTTTTAATATTAGTTTCAATCACAGGAATTGGAGGAGTTTTTTCTGAGTTTGGAGAAAAAGATAATAAGTGGA # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACCTTAACATAGGATGTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 29221-28671 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMDR01000027.1 Clostridium tetani strain 3483 contig_0028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 29220 30 100.0 35 .............................. TATACACTTTTTTGTGCTATTAACCATCTTAATTT 29155 30 100.0 35 .............................. TAAAATCACCTCTCTTCCAATTCCTCTATCCTACT 29090 30 100.0 34 .............................. GCTATAAGCTTACTTAATTCCTTATTCATTTCAG 29026 30 100.0 35 .............................. CATTATTATGTAGAAGTGTTCCAATATAGAGGTAG 28961 30 100.0 36 .............................. TCCTGTTTTTGCTTTACAATTGCATTAACTTTATCT 28895 30 100.0 34 .............................. TCGTTTTTATTGCCTATTTTTATAAATTTATGGT 28831 30 100.0 35 .............................. ATCTAAAGGAACATTTAAATTTTTAACAGTTCCCC 28766 30 100.0 36 .............................. TTTTCCATACTTTTTTGGTTACTTTTTTTATAACCT 28700 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 99.6 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : AAGTTCAGAGGAAACAGTAATTAATGGTGAGAAAGTATATGTAGATGGTGATAATATTTTTAAATTACCAATTAGTGAAGAGGATTTTTGTAAATCTCTATACTTTAATAGTATAGTAGTAAGAATAGACGAAGATATGGAGATAATGGATTCAAGAATAATGATAGAAGCTTTTATAGATACAAATCCAGATTATTTTGCAGGTCATTCAATGGAAGTTACAATAACAGATAATTATAAAATATCAGTTGATGGATTGGCGGGTTAATATATAATATGTTATGTGTATGGGATATAAATATATTAAATTAAAAATTATAAACTTTCCCAGGTGATTTTAAATAGGAATATAGTTTAAGGTATTGATTTGTAAGGATTTATGTGCTATTCTTTAATGTGATTTTTCAAAAGCTAAATCACCTGGGAAATTTTTAGAGAAATGTTGAAATATCAATGGGTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TATACATTAAAAAACCTTAGCCATGTCGTTTAAACCCATGATTATTCTGTTTAAACATCTTATTCTATGGTAATATAATAGGGTAAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGTATATTAAAATTGGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGACAGTATGGGAAAACCACTACTTTATATTTGTTAGAGAAAAGACTAAATCATATGAAAGAATACTTGCCTATAAAAATAAGTTTTGAAGCTATAGATACAGAGGGATATAGTAAAGTTGAAAAATTTTTAAGTAGTATAATGATGCAAATAGTGAACTATTTTAGATTTTCAACCAATAAAGAAATGTATAAATTCATAAAAAATCGTGAAAATCAAATTACTAATATGAATGATTTTAATAGTTTTATAACAGATTTAGTTGAGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //