Array 1 94577-96045 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRGS01000115.1 Pseudomonas aeruginosa isolate 64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94577 28 100.0 32 ............................ TCGCGAGCTTCACGAACGAAGACCAGCGAGTT 94637 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 94697 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 94757 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 94817 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 94877 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 94937 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 94997 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 95057 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 95117 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 95177 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 95237 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 95297 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 95357 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 95417 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 95477 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 95537 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 95597 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 95657 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 95717 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 95777 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 95837 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 95897 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 95957 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 96018 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 106565-104920 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRGS01000115.1 Pseudomonas aeruginosa isolate 64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 106564 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 106504 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 106444 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 106384 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 106324 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 106264 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 106204 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 106144 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 106084 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 106024 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 105964 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 105904 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 105843 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 105783 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 105723 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 105663 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 105603 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 105543 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 105483 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 105423 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 105367 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 105307 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 105247 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 105187 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 105127 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 105067 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 105007 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 104947 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17464-16835 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRGS01000002.1 Pseudomonas aeruginosa isolate 64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17463 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 17403 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 17343 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 17283 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 17222 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 17162 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 17102 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 17042 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 16982 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 16922 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 16862 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //