Array 1 217610-214041 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDHX010000003.1 Salmonella enterica subsp. enterica strain SGEHI2016-PSU-BS-082SL opera_scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 217609 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 217548 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 217487 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 217426 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 217365 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 217304 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 217243 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 217182 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 217121 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 217060 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 216999 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 216938 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 216877 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 216816 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 216755 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 216694 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 216633 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 216572 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 216511 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 216450 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 216389 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 216328 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 216267 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 216206 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 216145 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 216084 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 216023 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 215962 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 215901 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 215840 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 215779 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 215718 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 215657 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 215596 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 215535 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 215474 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 215413 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 215352 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 215291 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 215230 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 215169 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 215108 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 215047 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 214986 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 214925 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 214864 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 214803 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 214742 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 214681 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 214620 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 214559 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 214498 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 214437 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 214376 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 214315 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 214254 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 214193 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 214132 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 214070 29 96.6 0 ............T................ | A [214043] ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235404-234156 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDHX010000003.1 Salmonella enterica subsp. enterica strain SGEHI2016-PSU-BS-082SL opera_scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235403 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 235342 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 235281 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 235220 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 235159 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 235098 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 235037 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 234976 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 234915 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 234854 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 234793 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 234732 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 234671 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 234610 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 234549 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 234488 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 234427 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 234366 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 234305 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 234244 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 234183 28 86.2 0 .........A..T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //