Array 1 28-526 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVNG01000037.1 Streptococcus pseudopneumoniae strain 277_SPSE 464_7113_217674_217+,127+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 28 36 100.0 31 .................................... TCTGAAACGTTTGAGTTTGGGGACACGTTAC 95 36 100.0 30 .................................... CTAACAAGCTAGTAGCAAGTAATATCTTCA 161 36 100.0 30 .................................... CAAACACTATCTGGGTATACACTAACAATC 227 36 100.0 30 .................................... AAAACTTTGGTACAGGTGTGCCCCCTTGGA 293 36 100.0 30 .................................... TGGATGGTCACCGGGAACACTTTCAATCAA 359 36 100.0 30 .................................... TTATAATTTACCTGTAATTACAAAGAAATA 425 36 100.0 30 .................................... CGGCGACTGCAGAGAAAGGGCTACCGAGAA 491 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GACTTGTCAGGAGGTATCTAATGCCTTG # Right flank : CACATTAAAAGCTACTCATTTTTCAAGTAGCTTTTTTTCTTATTCAAGTTTACATATTAGTCGTCACAATCCCATTCCCTTGTAGAAAAGCAACACTGCGAGTCCTACGAATAACACTACCGCTCCTAACCTCTGGCTAGTACTATACATCCGTCTTTCTCCTCGGACTGGAAAGATAATTGCTAGAAATGCTCCACCAACTGCTCCCCCGATATGGCCTGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATAATGTTAACCACAAAAAGTGTCAGATAAGATTGCCCTAGCTGTTGGATATAAGGATTACGCGTTGCATAGCGAAGAACAATAATCGCGGCAAATAGCCCATAAAGAGAGGTAGAGGCTCCTGCTGCTAAGGATTTGGGACTAAATACAAAAACAAAGAGATTGCCCATCATTCCTGATAAAAGATAGAGAAAGAAAAACTTCTTGGATCCGAAAATTTCCTCTACTTGCCTACCAAGATAATAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 855-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVNG01000042.1 Streptococcus pseudopneumoniae strain 277_SPSE 470_21847_1021814_267+,...,434_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 854 36 100.0 30 .................................... GGGGTAGATGTCTGGACGGCTGTTCAAGCC 788 36 100.0 30 .................................... ATGAAGAAATGGAAAGAATACGTGAAGAAT 722 36 100.0 30 .................................... ATGTGGCTTCTATTCCATTCGCTACCGCCT 656 36 100.0 30 .................................... AATAGTATAGGTTAGTAGTGACATAATCAC 590 36 100.0 30 .................................... TAAGCAATTATCTGATTATATCCAAGTATT 524 36 100.0 30 .................................... CCAGTTTATCTTTGTTAATGATAGACTTAG 458 36 100.0 30 .................................... ACCTTGTCCAGGACGTCCCACAATGACTAT 392 36 100.0 30 .................................... ACATCAAGAGCGAACATACTCACAAAGAGA 326 36 100.0 30 .................................... AAGTCATACAACGAACGGTCGAATATCCCT 260 36 100.0 30 .................................... AACTATTGCGACTTTTCTAAAATCCAGATA 194 36 100.0 30 .................................... AACTATTGCGACTTTTCTAAAATCAAGGTA 128 36 100.0 30 .................................... TATTTCGTGAAATGATATAATGGTTATAGT 62 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTTAATGACAAGCCAGAAGTCAAATCCATGATTGAAAAACTGGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTAGAAAATGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTGATCGATGCTCTAGGGGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGTCCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAGGGTCTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGGTAACAATTGGAGCCTGACGAGCTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : CAACGACTTGTCAGGAGGTATCTAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //