Array 1 6256-3910 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJLC01000001.1 Bifidobacterium pseudocatenulatum strain NBRC 113353 sequence1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 6255 29 100.0 32 ............................. CAACGTCGAATATATCGGCATGGAACTGCAGA 6194 29 100.0 32 ............................. TCACCGTCTACATGACTAACCCCGACATTTTA 6133 29 100.0 32 ............................. TAATAGGGGGAGCGTAACGGTGGTCATGACGT 6072 29 100.0 32 ............................. ATTTGAACGAAACGCTGAACATGGTGAATGCC 6011 29 100.0 32 ............................. CGTCTGATATGGTCATGCTCCCGCAAATCTGC 5950 29 100.0 32 ............................. CTCGCTCGGCTCGAAGCGGTTAAAACGATTCC 5889 29 96.6 32 ............................T ATCGTTGCCTTGGGTCGATATCCAAGGGGGCG 5828 29 100.0 32 ............................. CGCATCGAAGGCGTGGAAGCGCGAGAAACCCA 5767 29 100.0 32 ............................. TCGTAAACTACCTAGGCATCGACAATTCGACC 5706 29 100.0 32 ............................. GGTACCAGCATGTATTATTTGGACACTCCCGC 5645 29 100.0 32 ............................. GTGGAATGAAATTCGGAAACAATTTCTTAGCA 5584 29 100.0 32 ............................. TCTGCCACACGTCCAATTGGATATTGAGCTGT 5523 29 100.0 32 ............................. TCGCCCAAGGCCGACGGCCCGCCCTTGGATGC 5462 29 100.0 32 ............................. GCCTTGCAAGCATTTCACGTATTGGCAAGCCG 5401 29 100.0 32 ............................. CGTTTCGTCGCGCAGATTATGGAAACACCCCG 5340 29 100.0 32 ............................. GCGCCGTTCGAGAATCCGTTGTCGGTTTTCAA 5279 29 100.0 32 ............................. GATTGCGTTTGGAGCATGGTCAATCGCATCGG 5218 29 100.0 32 ............................. GTATTATGGCACTTTTTGTTTCATTCCGAACT 5157 29 100.0 32 ............................. TCGGGTTCCAATGGCACGTCATAATGTTGAAA 5096 29 100.0 32 ............................. GCCGTGGCGGATTTGTTGTTTGTCGATATTCA 5035 29 100.0 32 ............................. CGATGCGTTCCACCGCCCCTCGCGGTGCCGAA 4974 29 100.0 32 ............................. GACATGTTCGGCACCGCCGCTGCGGCACTGCC 4913 29 100.0 32 ............................. GCTTTGCTGGCCAGCCTGCGCAACGCCGGTAT 4852 29 100.0 32 ............................. GGCAACGGCATGGATACCGTGGACACGATGTG 4791 29 100.0 32 ............................. GCAGAAGCGACGCATCGCCGAACAGTACGAGC 4730 29 96.6 32 ............................T ATGCGCGCGCATCTTTAAGTCGCCCGTCGATG 4669 29 100.0 32 ............................. GAGTCAAGCGGCAAATCCTCGGGCACGCAATC 4608 29 100.0 32 ............................. CTCCATGTAGACCTCGGACTGCCGGTCAGCGT 4547 29 100.0 32 ............................. GCCCCTTTGACCGTTGGAACGCGACCTGAACG 4486 29 100.0 32 ............................. GGTACACGGTCCGCTAACGTGGCATTGAGCAA 4425 29 100.0 32 ............................. GAATACCGAACCGGCACGACTTAAGAATAGCA 4364 29 100.0 32 ............................. CGCACCATGACGCCGATCAACCCGTTGGCTAG 4303 29 100.0 32 ............................. AAAAAGGCCGACAATAACAGCACAATCCTCGC 4242 29 100.0 32 ............................. CCATCCCAATCATCCGAGAACCTGACGTTCTG 4181 29 96.6 32 ..A.......................... GCCAGGCATCCGGCGATTCGCCTACCGTCACC 4120 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 3938 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 37 29 99.4 35 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACCAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : AATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCCGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATATATGGCAGGTGTTCGTGCGAAAAGCGCCAAAAACACCCCCCCCTTAAGTGGCTTTTCTCGAAAGGCATGTGCTATATGTAAGCGAGAAACCTCCGGTCAGATGCCAAATCTGCCATATATAAGCCAGATATCACGGTTCAGCTCAGATGAACTGGGTGTATGTCCATGCATTTCGATG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //