Array 1 63808-63108 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NOCX01000018.1 Escherichia coli strain MOD1-EC5780 MOD1-EC5780_18_length_94306_cov_27.476, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     63807	    29	 100.0	    32	.............................	GTCAGGGTTACCGGGTTTCTGACATTGCTGAT	
     63746	    29	 100.0	    32	.............................	CCAGGGTACTCCAGGTCACTGAAGATACGCCC	
     63685	    29	 100.0	    32	.............................	AACAGCGCCTGCTCCTGCTGCTTGAATGGCAC	
     63624	    29	  96.6	    32	............................A	CGTTTCTGAGCGCGTGCCGCTTTCTTCGTAGC	
     63563	    29	 100.0	    32	.............................	GGCTGGACGCTTGGTTCAATCGACCTAACGTG	
     63502	    29	  96.6	    32	............T................	CCGCCGCAACAATCGCGCCCGCAGTGCTGCCC	
     63441	    29	  96.6	    32	.T...........................	ATTGTTCAGAATCGTCAGCGTCAGGCAGATAA	
     63380	    29	  96.6	    32	.T...........................	CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA	
     63319	    29	  96.6	    32	.T...........................	TTCAGTGAGCCATAAAACCGCAGCTTATTTGC	
     63258	    29	  93.1	    32	.T.......A...................	TTCAGGGTGTGATTCCGCATACCAAGCAGTAA	
     63197	    29	 100.0	    32	.............................	GGCGCACTGGATGCGATGATGGATATCACTGA	
     63136	    28	  75.9	     0	..A........C..T....T-.G.....C	|                               	C [63111]
==========	======	======	======	=============================	================================	==================
        12	    29	  96.0	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGGAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGTAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA
# Right flank :  AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGCGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT

# Questionable array : NO	 Score: 5.75
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   GTGTTCCCCGCGCCAGCGGGGATAAACCG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [10-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//