Array 1 3300526-3296470 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028974.1 Cronobacter sakazakii strain GZcsf-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3300525 29 100.0 33 ............................. TCCACCTTGCTGCTTTTGCTGTGGCGGGCCTGC 3300463 29 100.0 33 ............................. GAGAGACGCCACATGCGTGCCGCCGCAGCCATA 3300401 29 100.0 32 ............................. ACGAGTTCGACGACATCATTGTTGAGCTGCCG 3300340 29 100.0 32 ............................. CGATTGCAGCAAAAGAGCAGATTCGAGTCGCC 3300279 29 100.0 32 ............................. CCTACCTTTAGAGCTTATAAGCAGCAGCGACC 3300218 29 100.0 32 ............................. ATTTCGCCGGATCATTGGGAAACCGCCTCAAA 3300157 29 100.0 32 ............................. CCGGTTTTCCCCGGCTCATTAATTTACGCTTC 3300096 29 100.0 32 ............................. CGCCGCGTCCAGCTCTTCCTGGCGCGCATCCA 3300035 29 100.0 32 ............................. GAGAAACTGGTCAATCAGCAACACACCAACGA 3299974 29 100.0 32 ............................. CTAAAAGCTCTTTTTCCGCTCCATATTTCAAC G [3299953] 3299912 29 100.0 32 ............................. ATTAGCGAGACGTATCTCAACGGGCGCGGCAC 3299851 29 100.0 32 ............................. CGGCCCCGAAGGGGTAACGCCCGGTGTAAAAT 3299790 29 100.0 32 ............................. CGTATATGGACATGAATTAGGTGCTGATTATG 3299729 29 100.0 32 ............................. CCGGTTTTTGCTTTTGTTGCCACTGTTGAAAC 3299668 29 100.0 32 ............................. CTCCGCGTAATCCATCAACTGCTCGTGCCACT 3299607 29 96.6 32 ............................C GCCTCCCATACCGGAATAAGCCGCACGATGGC 3299546 29 100.0 32 ............................. AACCCGCCGGAAGTGGGAAAACTTTCGCTGCC 3299485 29 100.0 32 ............................. ACGTGGTAATTACCCCGGCATTTAGCGGTGAC 3299424 29 100.0 32 ............................. CGGCCACTCAGAACGAGTTCAACGCCGTCATA 3299363 29 100.0 32 ............................. ATTCAACACAATCCGCCCCATCCGGGGCAAAT 3299302 29 100.0 32 ............................. ATTCAACGCGCGTGCGCAGCTCAACAGCCGTC 3299241 29 100.0 32 ............................. TGTCGACCCTGCAGTTCTTTACGATGCTTCGT 3299180 29 100.0 32 ............................. TCGGCCTCGTTCTGCTGATAGAACGCCTCGGC 3299119 29 100.0 32 ............................. TATTCTCATTGATCTCTTTTGAGTTCATCTTT 3299058 29 100.0 32 ............................. TGGTCATTACGCTCTCCTTGTGGTGTCTGAGA 3298997 29 100.0 32 ............................. GGCGGAGAATTTACATTTTTCAATAGCTGGTA 3298936 29 100.0 32 ............................. TTTGCAATGATGTTTTTCAGGGCCTCTTTCTT 3298875 29 100.0 32 ............................. ACGGCGGCGTTGTTGTGATTGCAGCGTTTGAT 3298814 29 100.0 32 ............................. ATAATCGAATCCCCATGATGATGTTAGGTGGT 3298753 29 100.0 32 ............................. CGTCTGACGCCGGGGCGTATCATCATGACCGA 3298692 29 100.0 32 ............................. GCGATCATCAGGTAGAAATTCGTTGCAGAGAA 3298631 29 100.0 32 ............................. CTCCTCAGATTAGGCCCGACGCCTTGCGGCGG 3298570 29 96.6 32 ...................C......... GTTTTACCAACGCTGCCACTATAATTAATTAC 3298509 29 100.0 32 ............................. TGCTGTTACCCCATACATTAGGGTTTGACGCC 3298448 29 100.0 32 ............................. CGTTCAGCCGGAATAATTTTTGTTTCAGTGGT 3298387 29 100.0 32 ............................. ATCCGGCTCACTGGCAAATCGTGGACACAGAC 3298326 29 100.0 32 ............................. CACCCGAATGCGTTGTCTTTTGAGTTGAGGAC 3298265 29 100.0 32 ............................. GTCGTCAGGGCTGTGCAGTCAGCGCTGCTAAT 3298204 29 100.0 32 ............................. GGGTGAGGACGTTCAACCGAAGCATATAGGAG 3298143 29 100.0 32 ............................. GCTATATCCACGCTGCGGCCAATAGCCATTTC 3298082 29 100.0 32 ............................. ACCAGCCACCGTGTCACTACTGTGGAAGGTAT 3298021 29 96.6 32 ............................T GATGCGCGCGCGCTGGGACGAACGCAGCGCCC 3297960 29 100.0 32 ............................. GCCGATGAGGCCAACAAACAGGAGTGATCATG 3297899 29 100.0 32 ............................. TCAGACGCGGGTACGGTCGTAGTGTTCTGCTC 3297838 29 100.0 32 ............................. TTTTTAACTCATTTACAAGGTGGCTCTCAACC 3297777 29 100.0 32 ............................. CCTGCCAAACCATGCAGGCTTCACCCTCCATG 3297716 29 100.0 32 ............................. TTTTTAAGAGCGGGGCTAACCACAACGGCGTT 3297655 29 100.0 32 ............................. GTTATCGGATTCAACCCTTCATCAGCAAGGTG 3297594 29 100.0 32 ............................. CAGATTCCGTGACTTACATAATCCCCAGCCAC 3297533 29 100.0 32 ............................. TGCCGATGGCGGTCTACTGCGCGCCGCTCGTT 3297472 29 100.0 32 ............................. CGGGTGTTTATCCGCGTTCAGTCGGAATTTGA 3297411 29 100.0 32 ............................. ACGTCTTCGACCCATTTATCCGTCGCGGCGCT 3297350 29 96.6 32 ............T................ TATACGCCCCGAGTCCCGTTTTTGCGCCGTAG 3297289 29 96.6 32 ............T................ TGGATCGCGTCGTAAATACCCGAGATAGCAGC 3297228 28 89.7 32 A...........T.......-........ GGTCGACACGCCCGCCGAACGTCACGGTTGAT 3297168 29 96.6 32 ............T................ TCGTTTTTGCGGTTATTGTTGCTCACCTGTTG 3297107 29 96.6 32 ............T................ TGGATCGCGTCGTAAATACCCGAGATAGCAGC 3297046 28 89.7 32 A...........T.......-........ GGTCGACACGCCCGCCGAACGTCACGGTTGAT 3296986 29 96.6 32 ............T................ TCGTTTTTGCGGTTATTGTTGCTCACCTGTTG 3296925 29 96.6 32 ............T................ CGCGCCGGCGCTACCAGTTGTATTGCTTGCTG 3296864 29 96.6 32 ............T................ ATTAACGGACTGCAAACTAAACCGTTTTTAAC 3296803 29 100.0 32 ............................. AACGTGTAAATCAACTGGAGGCACGGGTCAAA 3296742 29 96.6 32 ............T................ AGACCAGACGCCGATACCAGCGAAGAAATGGC 3296681 29 96.6 32 ............T................ CCGCCATCATGCGGCTCACTTGATGCGGATGA 3296620 29 100.0 32 ............................. ATTGCGGGATGACCAGTTCGCGAGCTTTCTGA 3296559 29 100.0 32 ............................. GTTCTTTAACGCTCTGGTGACGCTTACCGTAT 3296498 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 67 29 99.1 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCACTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTTCGCGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCGGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3327832-3326827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028974.1 Cronobacter sakazakii strain GZcsf-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3327831 29 100.0 32 ............................. CACACAAAAACACGCAGCAACAATATTTTCAA 3327770 29 100.0 32 ............................. CACGACCGGCCGGGATCGTAACGGTTAAAGGC 3327709 29 100.0 32 ............................. CGAGGCTTTGCGTCACTAAAAAAATTGGGGCT 3327648 29 100.0 32 ............................. GTGGTGAAAACCTTTTTAATTGCCGTAGCGGC 3327587 29 96.6 32 .......T..................... TCCACTTGAGAGCAGAGCCCGACGCCAGAAAT 3327526 29 100.0 32 ............................. ATCATCGACAAACTCTTGCTGCTCTCCGATAA 3327465 29 100.0 32 ............................. GCGGTTGCACTCCACCACGAACCCCCCGAACC 3327404 29 100.0 32 ............................. GCAACGAGAACAAAATTGATGGCGCGGTCGCG 3327343 29 100.0 32 ............................. TCACCTCTCTCTTTTTTTTGAATAAAATCACC 3327282 29 100.0 32 ............................. TTTCCGCCGGTCGCGGCGTCGTATACCGCAAA 3327221 29 96.6 32 .C........................... CGAGGGGGCTGTCAAGGGGATTTATTGTGCTG 3327160 29 96.6 32 .C........................... GCTGGGAAAGTGGGGTTGTCACAGCGTGTCAC 3327099 29 96.6 32 .C........................... GGAAGCGCCGTGCGCTGTGCGATGGGAAGCGC 3327038 29 96.6 32 .C........................... TTAGTTGACACGTATTTACCGGGCGTTATCGA 3326977 29 100.0 32 ............................. GGTGCATCCGGCGGCAGCGGCTGGCGCATTCA 3326916 29 96.6 32 .........................G... GCGGTGCCGCATGACCGACACAGCACAACTGA 3326855 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCACGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTAGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTGAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCAATCAGTACAAAGAGTTACTTTTAGT # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGGCAGCCGTAATAAACCGCCCAGGCTCTTCGCGTCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCATCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3608688-3608480 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028974.1 Cronobacter sakazakii strain GZcsf-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3608687 28 100.0 32 ............................ TATTGCCGGTGGAACAATGACCGGGATGATAG 3608627 28 100.0 32 ............................ TGCTGGCGCATCCGTTCGCTAAACTGCCTGTC 3608567 28 96.4 32 .................G.......... TCCGGCCTCCGGCCTCCGCGCTCCGCTTGGCC 3608507 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTAAGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : TCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGCAAAACCACATTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGGCGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //