Array 1 200494-201315 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHHI01000002.1 Escherichia coli strain EC_80 NODE_2_length_322936_cov_17.510935, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 200494 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 200555 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 200616 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 200677 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 200738 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 200799 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 200860 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 200921 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 200982 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 201043 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 201104 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 201165 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 201226 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 201287 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 227033-228342 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHHI01000002.1 Escherichia coli strain EC_80 NODE_2_length_322936_cov_17.510935, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 227033 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGCGA 227094 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 227155 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 227216 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 227277 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 227338 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 227399 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 227460 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 227521 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 227582 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 227643 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 227704 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 227765 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 227826 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 227887 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 227948 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 228009 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 228070 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 228131 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 228192 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 228253 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 228314 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //