Array 1 433392-434517 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBC01000006.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N28605 contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 433392 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 433453 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 433514 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 433575 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 433636 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 433697 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 433758 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 433819 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 433880 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 433941 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 434002 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 434063 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 434124 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 434185 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 434246 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 434307 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 434368 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 434429 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 434490 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450775-452438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBC01000006.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N28605 contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 450775 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 450836 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 450897 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 450958 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 451025 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 451086 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 451147 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 451208 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 451269 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451330 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 451391 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 451452 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 451513 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 451574 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 451635 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 451696 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 451757 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 451818 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 451879 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 451982 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 452043 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 452104 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 452165 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 452226 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 452287 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 452348 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 452409 29 96.6 0 A............................ | A [452435] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //