Array 1 41458-38877 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENMO010000028.1 Serratia fonticola strain TZW19 seq28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================== ================== 41457 28 100.0 32 ............................ CAGAAGCCTATGCAATGATTCACCAGCGCTTT 41397 28 100.0 32 ............................ AGGAGTACACCCAGCAGTCAGCGCATTACGTC 41337 28 100.0 32 ............................ AACGGGGAATCGTTTTTGCCAGTCGATCATGA 41277 28 100.0 33 ............................ CCAAGCGAGCGGCCACGTATCAAGAGTTGATAG 41216 28 100.0 32 ............................ TCATTCTGGAGGCGTTGGAGTAGCCCCCAGTT 41156 28 100.0 32 ............................ TGGTGTTCCCTTCCCGCGCTTGGATACATCTT 41096 28 100.0 32 ............................ ATAGTGGCATTGGTTCCCGGCGTATCACGATC 41036 28 100.0 32 ............................ AATTCGCAATTATCATATGCGGCCGCAATAAC 40976 28 100.0 32 ............................ TGCACATACCAGCGTGTAACAACTGCCAAGTT 40916 28 100.0 32 ............................ AAGGAACTCAGCTACACAGGCGGCCAAAAGGC 40856 28 100.0 33 ............................ AAATTACCGAAGTAGCGCACCGCGCCGATCCCG 40795 28 100.0 32 ............................ TGCAGCATGCTGAAACGATCGGTATGGGGATG 40735 28 100.0 32 ............................ CTCGACCTTGAAGCACGTCTTAAGCGCCTCAT 40675 28 100.0 32 ............................ TTGAGGTAAGATCCGTAATGCCTGAACAACAT 40615 28 100.0 32 ............................ TTCAATCGAAATCGTTGAACCAAAAGCTAAAA 40555 28 100.0 32 ............................ TCATGCGTGGGATGGGCTTTAATTTTCTCGAT 40495 28 100.0 32 ............................ TTGACGCCATTACGCAGAACAAGGTGATCATG 40435 28 100.0 32 ............................ ACCCGGATACCTTGCATTACTGCGAATCGGTC 40375 28 100.0 32 ............................ TGGCGAGCCTTACAGCATTGTCGTCTCCACCA 40315 28 100.0 32 ............................ ATCGAGAAAAATATTGGTACCATCCAGACTGC 40255 28 100.0 32 ............................ TGTTTTGGCTTTGGCCGGAACGGAAATAGTGA 40195 28 100.0 32 ............................ TGTTGGCTGAGGCCGCCATGGTGATGCGCAAC 40135 28 100.0 32 ............................ TGTTCAATCGTCCAGGCCAGCACGGTGTCAGC 40075 28 100.0 32 ............................ CGGGCACGATAGCGATCGGAGTCACCGCGGAA 40015 28 100.0 32 ............................ CGAGAGACTGAAAGCCATTGGCGTGCTTCAAG 39955 28 100.0 32 ............................ GTCAGCATCGGCTGGGATTGTTACCTGAAAGG 39895 28 100.0 32 ............................ ATCAAAGAAAAGCCTGACAGATGCCACTACTA 39835 28 100.0 32 ............................ ACGAGAGGCGTTTTCAAAATGCGTTCGCGCAT 39775 28 100.0 32 ............................ GTACCTGCGGCGTAGTCACAGGAACCGGCTTA 39715 28 100.0 32 ............................ GGTATGCCGATATGCTCATCAAGCCAAACTGG 39655 28 100.0 32 ............................ TCGAGCAGCGCTGCTTTGCCGGTACTGCCGGA 39595 28 100.0 32 ............................ TATGTTAAAGGTTTACCGTACAAACCCGTTTG 39535 28 100.0 32 ............................ TTAGTTAGCGTTACGTTTGTCTTTACGAATAA 39475 28 100.0 32 ............................ GGTTGTACAAATAAACCCCAACCCATACCAAC 39415 28 100.0 32 ............................ ACGATGAGCACGCCATAGCGATGCATGAAACA 39355 28 100.0 32 ............................ TCACGTTGATGAAGGCCGAGAAAGCGGAGCGT 39295 28 100.0 32 ............................ CGTTCAAAGGCAGCAAGGCGGCGCAGATAGGC 39235 28 100.0 33 ............................ AGGCAGAGGCGTATACTGATCTGCCTCGTCAAT 39174 28 96.4 32 .............T.............. AAGCTTCTGAGTTTGAGCAATTCAACATTCAA 39114 28 96.4 182 ......................C..... ATAAGGGATTTTAAATCCCTTTTGATTGGCGACAAAAAGACAATATCGCTGGTTTTTTAACGGCACAAACTGTTCGGAACTAGCTAACCTATTGATAAAAAACGGGCGCAGCATGCAGCGCCCCTACGTGTGATGCCGGTGAAGGTTTATCAGCTGTCTTTAAATCCCTTGTGTCTACCAAT 38904 28 71.4 0 A....T...AA.G...C....AC..... | ========== ====== ====== ====== ============================ ====================================================================================================================================================================================== ================== 41 28 99.1 36 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAGGCATTGATATTTATTCCTTTAAACACAACGAACTCACCAACGTAGCAAGTTGGCTACTGGATAGTCTTGGTCTCCCTGTAGGAGACGATAAAGCTGCAATATAAGGGAGTATTTGGCTAGCTAAGTCAATATTGGGGGACTGATTTGTGGGCTTTAGCCACTTCAAAAATAGCGCAGACTAAGGATCTGTCGCATAAGACGAGTGTTGCATGTTGGGGAGCGCAGCTATACAGGAAGGTTTGAAACCTCCAATGCGGCAGCATCGGGTAGGGTAGAAATACGACTAATCAGCGATTTTAGTGGACAGATAGACTCGTAATCATTTCACGAAGGGGTATCTACCTCTGGAGTGGGTTGTATCCTGCTTACCCTAATTTTTGAGCCATTTATAACTCATTGATTTTAAAAACCAGAAAAGGAACGGTGAAAAAAGGGTTTTCTGATAACTATCAGGGTTATTGTTTAATTAACAGTGGATTAGCGATAAGATATAACA # Right flank : TCAACTTCGGTTGTTATCGCGAAAGATCCTTTTTGCTACATTCAATGCAAACATTAAAAAGGAATTTAGACATGAAAAAACTTGCCTCAGTTTGTCTACTCAGCTTGTTGTTTGTCTCGGCCTGTAGCCCCCACAAAAGCTCCAATACCAAACCCATCGAGCTAAGGCCAACGGAAGTGGCACCGCTCGTTGATAAACCGCTCATGTACGCTCGTGAAGTTCGGGCAGCCATTCAAAGAAAGCTTTTTATCGAGGATGACTATCGCGGTAAAACCTGTGACATCAACATCAAGATGTCTAAAGACGGGAAGGTATATGCCCTGCAGGGCAACGGCTATCCTCCGCTGTGTGAAGCTGCGATAAAAGCTATCAAAAATGCTGACATCCCCGCGCCATATGACGACGAAACCTACCAGCAATTCAAACAAACAGTGCTTAGCTTCCAACCTGTTTGAGCATCAGAGGCGGGGAGTCGATAGTCATGGGGGCAGCCTGGAGTG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 45406-43647 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENMO010000028.1 Serratia fonticola strain TZW19 seq28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45405 28 100.0 32 ............................ ACTCATTGTTAGTGCGCCGCTAATCACTGCAA 45345 28 100.0 33 ............................ CTAAGGAGTTCCAATGGCTATCACGTCAATTCA 45284 28 100.0 32 ............................ GGTACCAGACCAAGCATGAGAAATCTGAAAGC 45224 28 100.0 32 ............................ TCCGCTAGCAAGAAATCCGCTGGAGTGGCGGG 45164 28 100.0 32 ............................ CTGCGCCGGATCGTAAAGGGTATGCAGCGTTT 45104 28 100.0 32 ............................ TGGTCGTTGAGTCACGCAGTGGTGACGCTTGG 45044 28 100.0 32 ............................ CAGTAGACGTGGGCATTAAGCCTAATGATTCC 44984 28 100.0 32 ............................ ATGCTGAAGGCGTGATGCGTACTCAGTATATT 44924 28 100.0 32 ............................ AATATGAGAAGCCTAATTGCAACAACTTAAAA 44864 28 100.0 32 ............................ ACAAGTAAAGCTGGAAGATTTTAGGATGAAGC 44804 28 100.0 32 ............................ AATGATACTTAACGCAACGAACAGCAAGATGC 44744 28 100.0 32 ............................ AGATGCCTCGCACACATCAGGTGGTGATTTCA 44684 28 100.0 32 ............................ AATAAGAACGGCATATTCATTAAGGGAGAAAA 44624 28 100.0 32 ............................ TCAGACCGTAGAAGTTAGCACCGGTTTTCGCA 44564 28 100.0 32 ............................ ACGCCGGTGACGGCGTGAGTAAGTCACAGCTC 44504 28 100.0 32 ............................ GGTACGAGCTGAGTTTTCGAGCACCCGGAGAT 44444 28 96.4 32 .............C.............. TGTTTGATAGAATGCCAGCGCCCGTTCAGCAG 44384 28 96.4 32 .............C.............. TAAATGCCCAGCAACCAACGCCCAGGTTGGCA 44324 28 96.4 32 .............C.............. ATCACAGCTCGGGCCAGGTCAGGGACAGCAGA 44264 28 92.9 22 .............C..T........... TCGTGTTTTCAGCATCGGCCTT Deletion [44215] 44214 28 96.4 32 .............C.............. GGATGTGATAGCCGATTTCCGTGCCCTGCCGT 44154 28 92.9 32 ........T....C.............. TGGCCCCAACAATGACGCCATACTCATTGAAT 44094 28 96.4 32 .............C.............. GGGATCGAGCTGGCGATTGGTCGCAGTGTGGA 44034 28 100.0 32 ............................ AGAGGTGGCGGATGACATTTGCGCACTGCTTG 43974 28 96.4 32 .......A.................... AGCAACGTCTGATGTTCGCAGGTTCCCGTAGC 43914 28 100.0 32 ............................ AAAGTGATAGCACTTGTTGAACCAGGCACCAG 43854 28 100.0 32 ............................ TGCTCGCCCAATATCCTCGTATCGCGCAGTAT 43794 28 100.0 32 ............................ AGGGTGTTGATTGCCACCGTGGCGCGCGGCAA 43734 28 100.0 32 ............................ AATCACAACCCACTGAGAAAGAGGAACATATG 43674 28 92.9 0 .......A.....C.............. | ========== ====== ====== ====== ============================ ================================= ================== 30 28 98.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGGTGCTCACGGCCTTTGAGGCTTTACCTTGGCGTAAAGGATTACGGGATTACACGGAATGTGGCGAAATTCTGCCAGTACCCGCCAATGTAAAATACCGTACAGTGCGACGAGTGCAGATCAAAAGCAGCGCCGAGAGATTACGTCGTCGTTCTGTTCGCAAAGGATGGGTAACTGAAGAAGAGGCTCGCCTGCGTATTCCTGACGCCGTTGAGAAACGCTCAGCGTTGCCATTTATTCGTTTAAAAAGTCTATCCAGCGAGCAAACCTTTTTGTTGTTTATCGAACAGGGCAAGATTTGCGATAACGCAACAGAGGGGGTATTTAGTGCTTATGGTCTAAGCGCAACGGCAACCATCCCGTGGTTTTAACCCTAATTTAATGGCTGATTCTAACCTATTGATTTTAAAAGTTGGAGTCAGTCATGTTTAGAAAAGGGTTTTTGGGTAAGGTGGTTGTATTCTATTGTATTAACAGTTAGTTACCGCTGGCATGTAACA # Right flank : CCACCACATATTCGGTGAGTAGTTTCGCCACACGTAAATTGTTGCTGCCTGGCAGCTTACCGACTACGGCCATATAGCCGCATTATTGTGCCAACATATATCCAGTCGCACATTCTGTGTTTAAATGTTCAAAGCCTGTGAGGGAGAAATGTGGTCAAGTATTTGTTCTACTCGCTGTTCCACGCTTCCGGTAACGTATAGGAAGGGAATATCACGTCTGGTCAATTCTTCGATATACCATTGCTGTTGTCGTTCACGGAATGACTCATCCTGGCGTGTGCCGTCCTGATGAAAGGCGAAATCGTCAGCACAAAGTATAACGGTATCATAATGTCGACAGGTTAACTCCTCCAGCAAAGGGTCTGCTCTACCAAACATGGCCAGCGAGTAAAATAACGTTGTCAGCGGAGAAGTATCACAAACTAAATATTGATTTGGGCATGCAGTCATCTCCCATAAGGTCTGGGTTTGTGCAATATGCAGCATGTCTTCGAAAATCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 54834-53905 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENMO010000028.1 Serratia fonticola strain TZW19 seq28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54833 28 100.0 33 ............................ CTCTTCAGAGGGTAGGCTTTCAAATACATCAAG 54772 28 100.0 32 ............................ TGGTGATGGCGGAGGAACTCAAGCTTCAGGGC 54712 28 100.0 32 ............................ ACATTGTGGAGATGCACCAAACAACAATGTGG 54652 28 100.0 32 ............................ AGAGTACGATGAAGACAAGGGCGGCACAGGTT 54592 28 100.0 32 ............................ GCTCGCTTGGGGCAGAAGTCCTTTAGTCGCTC 54532 28 100.0 32 ............................ CATATTGCCAATGGGCTGGCCTTGATAGTTAC 54472 28 100.0 32 ............................ ACCAAAACAGGAGGGGTTCTGATTTATGGAAA 54412 28 100.0 32 ............................ TAACCTGGCAGACGCCCTGATGATGTGTATGC 54352 28 100.0 32 ............................ TGGGAGAAGCCGAAGAGCCGATGACGGTTGCT 54292 28 100.0 32 ............................ ATGACGGAAAAGCCGTTACTACCTCTCTGGCT 54232 28 100.0 32 ............................ CCTCATTGCGTTATAATCCGTTGTGGATCAGG 54172 28 100.0 32 ............................ CTGCAGGTTAGCGAGCCACTGAATTGGTCTTT 54112 28 100.0 32 ............................ ATGCACGCAGACCAATTAGACCAAGCTTCTGA 54052 28 100.0 32 ............................ TCGACGGTCGCAAGACGCAGACACGGCGGGCT 53992 28 100.0 32 ............................ ATCAAAAATTGCGGCACCGGCGCGTTGGCCAA 53932 28 92.9 0 .......................G...G | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGATAGCCAAGGCAACAGTGTGGGTTCTGTGGGGCAAGGTGGGCAAATGTATGCTCGCGTAGCGGAAGACAAAGGAGAACTGATTGTGAAATGGGGTGTCGGTAATGACATGCAATGTACTGTGGGATATATGCTGATGCCACAGGCAAAAAACAGCCCCGTTTCAGCGATCCAGGTCTTCGATTCAGTTTGCCAATAGAGACAGCACACTTAGCTATCAATCTGACGGGAGCTATGGCTCCCATCTCCTTTTCCCTCACTGAAACTCTTCCGCACGGTGGTATGAAAAACGAGCTGCATTCACCTTTGGTAGCTCTGTAATCATCCTGCGAACCTGTATCTATCCCTGATACTCGTAGTGTCCGTCTAGACCTTAATTTTGAAGGAGTTCATAACTAATTGATTTTAAAATAAGGATAGTGAGTGGATGAAAAAAGGGTTTTCCGAAGGGTTTCAAGGTTACTGTTTAAGTAACAGAGAATTAGCGCTAGGATGTAACA # Right flank : GTTGGCGCACCGTCAACTTTCCACCCCAAGCTTGTTTTTATTGTTAAGGTAATTGATGTGAATGATTCATGCCATGTATCTATCTTTATGATTCATAATTAATAAAAATTAAATGAAAATCTAACACCAATCACTCTATACAGTGAGCCTATTATGCTAAAACAACAATATCGCGTTGGCATCTGTCATAGGTAATCACGTTCGGGATGATTTATGGCATAAAAACAGGGAAGTTTTCATTCCGTGCAAAATCAATTTTCGCCCTCTGATCTAAAAACCATTCTGCATTCAAAACGTGCCAATCTCTACTACCTGCAGCATTGCCGGATCTTGGTTAACGGCGGCAGGGTGGAGTATGTCACGGATGAAGGTAAGCAATCCTTGTATTGGAACATCCCGATCGCTAATACCACAGCTGTAATGTTGGGGACGGGAACTTCTGTTACTCAAGCGGCAATGCGTGAGTTTGCTAAAGCCGGGGTGCTGGTTGGATTTTGTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //