Array 1 219875-221672 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCQ01000058.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R8_9118_R1 NODE_2_length_345620_cov_1.39513_ID_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 219875 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 219936 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 219997 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 220058 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 220119 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 220180 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 220241 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 220302 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 220363 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 220424 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 220485 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 220546 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 220607 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 220668 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 220729 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 220790 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 220851 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 220912 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 220973 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 221034 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 221095 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 221157 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 221218 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 221279 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 221340 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 221401 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 221462 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 221523 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 221584 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 221645 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237784-239260 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCQ01000058.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R8_9118_R1 NODE_2_length_345620_cov_1.39513_ID_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 237784 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 237845 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 237907 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 237968 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 238029 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 238090 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 238151 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 238212 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 238273 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 238334 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 238395 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 238456 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 238517 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 238579 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 238682 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 238743 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 238804 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 238865 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 238926 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 238987 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 239048 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 239109 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 239170 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 239231 29 96.6 0 A............................ | A [239257] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //