Array 1 2331-2603 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAFI01000028.1 Escherichia coli strain TZ34_1P scaffold_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2331 29 100.0 32 ............................. CCGATCACACGCTCCCACGGGCCGTACCAGTC 2392 29 100.0 32 ............................. ATGATTTTTGCACGACGTTCAACCGGCGTTTC 2453 29 100.0 32 ............................. ATCTAACGGAGTTAATCTTATCCGACTTTTTG 2514 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 2575 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTATTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23655-24477 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAFI01000028.1 Escherichia coli strain TZ34_1P scaffold_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23655 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 23716 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 23777 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 23838 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 23899 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 23960 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 24022 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 24083 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 24144 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 24205 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 24266 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 24327 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 24388 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 24449 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AACGGATGAACAAGTCAATAAACTTCAGGCCTACTGGGGAATGCCACGACGTATACGTATTGATTTTAAGACAACCTCAATAGGTAACTGCGACATTTGCGGTAGGCAGAGCGATGCTCTTTTGGGCTTGATGTCACTCAAAAACTATGGTGTTCAATACGTCATGTGGCGCCATCCTCTAACACCTTACCGTCTGCCGCTTAAAGAGGGTGGAGATTTTTACTCAGTTAAACCACAACCTGGTGGTTTAATCTGGCGCGACTGGTTAGGCCTCATAGAGGTAGGTAACTCAAAAAACAATACTGAACTCCCCGCACAGGTCGTGAAACTTTTGAATGCCAGCAATCTAAAGCAGACAAGGGTGGGCTTATGGGGATTTGGTTTTGATTTTGAAGATATGAAGGTTCGTTGTTGGTATGAACACCATTTCCCGCTGTTGTTAAACAAAAAAGAAGACCTAATAAACCGCGCGTTTCTGGAACCGTAATTTGCTGCGGTAT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //