Array 1 43668-42510 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LDAN01000005.1 Streptococcus agalactiae strain SH3601 ctg7180000003444, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     43667	    36	 100.0	    30	....................................	AGATATGACAACGGATAGTGTTGATGGGCG	
     43601	    36	 100.0	    30	....................................	TTATCGGTGCTCTCGATTTGATGGCTTTGA	
     43535	    36	 100.0	    30	....................................	AATACATGAATCAGCTCTATCCAGTTAGAT	
     43469	    36	 100.0	    30	....................................	TGGTCTAACGGCGTCAGGTCTATGAATTAT	
     43403	    36	 100.0	    30	....................................	AAGGTACTTTTAGCTTGTTCTTGTGGTGTT	
     43337	    36	 100.0	    30	....................................	ACAGCTACTGTAAATTCTGCTTTTACGGTT	
     43271	    36	 100.0	    30	....................................	TAGTGCAGTTGTCAAGGAGATTGTGAGCGA	
     43205	    36	 100.0	    30	....................................	TTTAACCTTTGAAAATGTGAAAGGCTCGTA	
     43139	    36	 100.0	    30	....................................	GCGATGATGGTAAGTCATCATGGACAGCGT	
     43073	    36	 100.0	    30	....................................	TTTTACACACGATGTCAGATATAATGTCAA	
     43007	    36	 100.0	    30	....................................	AGTACTGCACTAGGAATTGTAGAGATCAAA	
     42941	    36	 100.0	    30	....................................	CGTACCATCTATCAATTTACCGCAAGCTGT	
     42875	    36	 100.0	    30	....................................	CCGATTATTTCCTACATAATACGCACGTTT	
     42809	    36	 100.0	    30	....................................	AACTGTGTGATACTTTTCGTTTTTTTCTTT	
     42743	    36	 100.0	    30	....................................	TTTTATAAGTGATAGAGTGTGCAACACCGT	
     42677	    36	 100.0	    30	....................................	TTAAAAGATTTAAACTATCAAGCGTCAATT	
     42611	    36	 100.0	    30	....................................	TGGTTATACATTTACTAATCCATCAGCATT	
     42545	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        18	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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