Array 1 8702-10178 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIHZ01000036.1 Salmonella enterica subsp. enterica serovar 4,5,12:i strain 3128 3128_37_length_40248_cov_29.0668, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8702 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 8763 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 8825 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 8886 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 8947 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9008 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9069 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9130 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9191 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9252 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 9313 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9374 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 9435 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 9497 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 9600 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 9661 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 9722 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 9783 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 9844 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 9905 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 9966 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10027 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10088 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10149 29 96.6 0 A............................ | A [10175] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8771-7156 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIHZ01000068.1 Salmonella enterica subsp. enterica serovar 4,5,12:i strain 3128 3128_69_length_14084_cov_28.3143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8770 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 8709 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 8648 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 8587 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8526 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8465 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8404 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8343 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8282 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8221 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8160 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8099 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8038 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 7977 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 7916 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 7855 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 7794 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 7733 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7671 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7610 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7549 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7488 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7427 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7366 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7305 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7244 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7183 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //