Array 1 284-1164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATEN010000004.1 Streptomyces sp. PLAI1-29 4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 284 29 72.4 153 C.CAC......T..C......AG...... CCGGGGTGGCCAGGTGAGGCCCGACCTGCGGCTCACCTCCGCTCGCGCGGAGAGGACGACATCGCGACCGTGTCAGGTTCCGGCTGACGCGGCTCACCTCCGCTCGCGCGGAGAGGACCAACGAACCGGTGGTGGCCCGGTGACGATCCACGG G [311] 467 29 72.4 30 C.CAC......T..C......AG...... TTCCACATGGTCCCGATCCAGTTGAAGAAC 526 29 96.6 32 ............................A TCGCCGCCATGGCGGTGCGCGCGGCCGAGACC 587 29 96.6 32 ............................T GACCACCCCTACGCAGACCTGGGTACCGTCCG 648 29 100.0 32 ............................. GCGTCCGGGCCGGCGGACATCCAGTCGATGTA 709 29 100.0 32 ............................. TGCCCACCCACACGCCCATCACCATCGAGCAG 770 29 100.0 32 ............................. GTCATGGCAGCGGCGAGCGCTGCGAATGTGAG 831 29 100.0 32 ............................. CCGTCCCAGGAAGGGCCGCCGACGGCATCGGC 892 29 100.0 32 ............................. GCCGAGGCCGCCCTCGCCCCGCTGCCGGAGCC 953 29 100.0 32 ............................. GAGACCCACGCATGAGCACCTTCACCTACCTG 1014 29 100.0 32 ............................. GACACGCAGGACCCGGCGACGACGATCCGCCC 1075 29 100.0 32 ............................. CACCGGGAGGTCCACGCCGATACGGGCCGCGA 1136 28 79.3 0 ....G.-G..............GCG.... | T [1149] ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 13 29 93.6 42 GTGCTCTCCGCGCGAGCGGAGGTGACCCG # Left flank : GGCTCAAGGGAGACAGCTACCGCATGCGCGGCCGAGACCTCGGACGGGTCCCCGCCGCCAACACCAGGGAATGACCAACATCAACTGACAACGGGTCCACTTTTCATCCGTTGCCTCCGGTCCACGATTGCGCCGTTGCCGACAAAGCGGATACGGAACGGCTCACCTCCGCTCGCGCGGAGAGGACGTCAGCGACGGACACGAGTTCAGCACCAGCGACGGCTCACCTCCGCTCGCGCGGAGAGGACATCAACGGCGACTCCGCGGTGAACCCCGACGCCGGC # Right flank : GGCAGGAGAAAACCCTGGTCAGGCGCCCTCCGTCGGCTCTCTAAAAGAGGCCCAGCTTCTTCGGGGAGTACGACACCAGGAGATTCTTCGTCTGCTGGTAGTGGTCCAGCATCATCTTGTGGTTCTCGCGGCCGATGCCGGACTGCTTGTAGCCGCCGAAGGCCGCGTGGGCCGGGTAGGCGTGGTAGCAGTTGGTCCAGACGCGGCCGGCCTGGACGGCGCGGCCGGCCCGGTAGGCGGTGGACATGTCGCGGGTCCACACGCCGGCACCGAGGCCGTAGAGGGTGTCGTTGGCGGTCTTCATGGCGTCGTCGAAGTCGCTGAAGGACGTCACCGAGACGACCGGGCCGAAGATCTCCTCCTGGAAGATCCGCATGTGGTTGGAGCCCTCGAAGATGGTGGGCCGGACGTAGTAACCGCCCGCCATGTCCCCGTCGTAGGTGACCTGTTCGCCGCCGGTGAGGATCTTGGCGCCCTCCTGCCGGCCGATGTCCAGGTAG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260843-260993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATEN010000004.1 Streptomyces sp. PLAI1-29 4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260843 29 100.0 32 ............................. TTCAAGTCGGCGAAGGCGGAGTTGAGCCACAG 260904 29 96.6 32 .........................A... GGCACCTCGGCCTTCGGGCTGAAGTAGCGGAT 260965 29 82.8 0 T.............T......G....T.A | ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 32 CTGCTCCCCGCGCACGCGGGGATGGCCCC # Left flank : GGCGACGAACTCCCACCCCCACGAGCCGCCGCTCATCACCGTCCAGATGACGCCGAAGACACCCCCGGAGACGACCCCCGAGGCCATCCACTTCCACCATCGCTCCATGACACGCGCCTACCCCCGCGTCACCACAAGGGCGCCGGGGGTGCCGAGGTCTCCTGCTGCTCCCCGCGTGCGCGGGGAGCAGCAGGAGTACGCGGGTCAGGGCCGGGCGCTCCTCGCTCGCACCACCGGCAACGAACAGTGCTTCACCTTCCGCACCCACGACCGCGCCTGGCGTCCCGTCGACCACGAGGGCCTGACCCTCATTCGCCGCCCGACCGCCAGCGGCCAGCCCCACAGCCCTGGCAACCCGAAGCCGGGCTGGAGCAAGGCTGCAAAGCGCCGCCGCTTCGGAAGAGGGTGAGAGGGCTATGGTCGATATACTCGAGATGCCGGAGTTGGCGAAAGTGATGGAGAACAGGTCTCCGCCGCGATAAAAGCCCAGGTCGCAAAGC # Right flank : AGGCCTCAGGTCGGACTTCCACGGCGGCCGCCGGTGGTTACCGCAGTGCCCCCTCCAGCACCGCCTCGCCCAGCGCCGTCCGGCGGTGGAGGACGCTGCCGCCCTGGCGGCGGGAGATGAGCAGGCCGGCCTCCCGGAGCACCGAGGTGTGGCGGGAGGTGGTGGAGGGGGCGAGGGCCAGGGCGGTGGCCAGGCCGGTGGTGGTCATCGGCCGGTCCAGCAGTTGCAGGAGCTGGGCGCGGGAGGTGCCGATGAGCTGGGCGGCGGGTGGTGCCGCCTCGCTCGGGCGGGAACGTTCCAGCCAGCCCGGGGTAGGGGAGAGGGGGTGCACGAGCACCGGGGGCAGCTCCTCGTCCGCCAGCGCCAGCGGGGAGCGCACGCAGAAGAAGCCCGGGACGAGGGTCAGGGTCCGCCCCCGCAGGCGCAGTTCGCGCCGGACGGGGTACGGGGTGCGCAGCGCGGTGCCGTCGCACGTCCAGCCGGGCAGCACGCCGTAGCTG # Questionable array : NO Score: 3.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //