Array 1 571-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCEC01000235.1 Serratia marcescens strain EL115 contig235, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 570 29 100.0 32 ............................. TCGTCGGCGCTGACCGTGCGCTTTTCCTTTTT 509 29 100.0 32 ............................. AACTGGCCGCATTTGGGTTAACGCCCGAGGAC 448 29 100.0 32 ............................. CATGTTGCATAGATAGTGCTTGACTTTGTTTT 387 29 100.0 32 ............................. CGCTCGGTGATTGGGTTCATCTCGATGGTGCC 326 29 100.0 32 ............................. GATTGGTTCGAGCCATCCCGAACCGTTGAAAA 265 29 100.0 32 ............................. AACAGGCTAACTTCACCGTGCTCAACACAGTA 204 29 100.0 32 ............................. AGCGTCGCAAAGGCGACGGATGTTCTTCAGTG 143 29 100.0 32 ............................. TAAACCGCGCACGCGGCGCCGCAGATCAGATG 82 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCCGCGCCAGCGGGGATAAACCGTTAACGACGATCTGGCCGGAGTGGTAAACCG # Right flank : GGGCATGTGGGAGTTTCCGCGTATTAACCAGGGGTGTTCCCCGCGCCAGCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6997-7147 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCEC01000051.1 Serratia marcescens strain EL115 contig51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6997 29 100.0 32 ............................. CCATCCAGGCAGAGACAGTGCTGTATGAGGCC 7058 29 96.6 32 .............T............... TAACCCCAATGCCACTGCGGATCCGCCAAACA 7119 29 86.2 0 ...............A........G..TC | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCAGAGTTTTTCCAGGCATCGAGCAGTTCGTCGGCAAAAATGGCTGTTGGCAGAATCGTTTTGATGCGCGCCGCCATGTCTTCTTTGTTCCCGCTGACCGACAGCGGAGCCGGGATCGCAGCTTCACGAGCCGCAAACTCAGGATCGATGATTGCCAGCTGCTCGAGTAGCGCATCGCGGCCACCGCTGACCTTAAGCGGTTCAGGCAGCGTGCTGTTGTACTCTTTGATGCAGGCTTTCATGGCTGTAGCAGTGAATTTCTGGCCGTCAGGAATGGTCTGGAATTCCGGCGGCAGCAGGGAGTAAATTCGGCCTATTTCGTCCGCATTACCGCCCAGCGCGTAAGGTGTTGGCAGCTTCGCGTTGTGTTCATCAATGACGGTGCGCAGAGTGTCCGTATCCGCCATTTTCGGCAGCGTATCGTTGTGCTGTTCAATAAATGCGCGCATTGAGGCGGTATTCGTGAAGGCGCCGTCCGGGATAATCGGTTCTACGTTGAA # Right flank : CCAGAGCTTCACTGCCGCACAGGCAGTTCGAATATGAGGGATAAAACTTTACCGACACCTGTTAACGGGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAGCTCCCCTTTGCCGCGCAGCGCCTTGGCACCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATATAGAGATACCAGTGGGGTAAGTCCATCATTGGGGTCCTGTGCAAGGGTAGAGATGACATCAGGCCGCCATAGCTAAGCGCGGCATCTCTATTTTGTCACGATTTAACGATGGATTTCACCACTGGCGGAACGGTTTGTTTATTCCGTCTTGACGATAAGGGATTATTTTACACCCACGGT # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22545-22757 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCEC01000148.1 Serratia marcescens strain EL115 contig148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22545 29 100.0 32 ............................. CCGGCGCGACCGATCAGCTGGTTGGAGATTGG 22606 29 100.0 33 ............................. CGCCACGCCCGGCTTGCCGTAGATGCGTATTGC 22668 29 100.0 32 ............................. CTATTACCGGCCAGACATCAACAATAATTTGG 22729 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCAGCCCGGTAGACGTGGCCGGCGAAGACCGCCAATGGGTGGCGCTGGCGCCGCTGGCGGTTGACGAAAGCCTGCGCCGTCAGGGGCTGGCTGAAAAGCTGGTGTACGAAGGCTTGGACTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCGGCCTATTACGGCCGCTTCGGTTTCAAACCGGCCGCTGCCTATGGCCTGCACTGCCGCTGGCCGGACACGGAAAGCGCATTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAACAGGTTTTAGTTTTTAATGTATTGATAATTAAATTCTATTTGGTGAACGGGAAATTCGCCAAGAATGTGTTTTGAAATTTGATTATAAATCAATTGGTTGTGTTTTCTAGAGAGTCGAAATTATTTGGTAGAATTTGAGGTCTTTAAAAATACATTTTAATTCAATAACATACTCTAAGA # Right flank : GGCGCCGTCCGGGATAATCGGTTCTACGTTGAAATCTCGCTCCAGATTCTCCGGCTCAAGCGCCAGCGTGTGCACCAGCGAGCCGAACGTCAGCGCGTCGCTGCGTTCCCGGCCGATCGTTTTGATGACGTGGCGCCCGTGGTAATACATCAGGCTGATACGCGCGTCCTTCACCTGTGTGCTGCTGATGCCGTTCGCAGCGTGATAGGCTGTGTTTGAAATATCAGCGTAACGGCCTGGCTCGAAATACGCCTGCGCGCAATCTGCTGCAGGCTCACTTTCTTGTCGCTGCGCTAATTCCGCTTTTTCACCGTCGTTTGAGGCGTCATTGCATGTCTGCTCTGGTAACGGCTGCTGCTCGGCATCTTTGCTCGGCTCGCTATCAACCTGCACTGTAGCCAGCGGGGAGGCTTCGAAAAGACTGGACACATCGAAGCGGCCACCGCCTAAACTGACAAGCTCTGGCTCTGGCTCTGGCTCTGGCTCTGCAGCCAACTGCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //