Array 1 39477-38166 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOLK01000052.1 Escherichia coli strain SC400 NODE_1_length_292803_cov_155.197_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39476 29 100.0 32 ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 39415 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 39354 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 39293 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 39232 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 39171 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 39110 29 100.0 32 ............................. CCGGTCGCGCTATTGAGCCGTTCTTTTCACAG 39049 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 38988 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 38927 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 38866 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 38804 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 38743 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 38682 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 38621 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 38560 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 38499 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 38438 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 38377 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 38316 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38255 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38194 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 65820-65180 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOLK01000052.1 Escherichia coli strain SC400 NODE_1_length_292803_cov_155.197_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65819 29 100.0 33 ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 65757 29 100.0 32 ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 65696 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 65635 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 65574 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 65513 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 65452 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 65391 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 65330 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 65269 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 65208 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAAGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //