Array 1 276306-273893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOMV010000001.1 Bifidobacterium longum strain MSK.11.12 NODE_1_length_353924_cov_435.022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 276305 36 100.0 28 .................................... TCGGACGGCTGGCCTCGTTTCTCCATCT 276241 36 100.0 28 .................................... AGAACGCCGGAAAGCTGTTCTAGCGGCC 276177 36 100.0 28 .................................... TCCGCAGCAGCCTGCCGCGCTTGAAGAT 276113 36 100.0 29 .................................... ACTACACGCGGTGGACGCCCGGCACGAAA 276048 36 100.0 28 .................................... ATGCACGCGATGGAGTCATGTCCAATGA 275984 36 100.0 28 .................................... AGAAAATGCCCGGTCTCGATCTGATACA 275920 36 97.2 28 .................................G.. TGCTTGAGCCTGGCCCAGCCGCCCGTGG 275856 36 100.0 28 .................................... TAGAGAATGAGATTAAGAATTGCTAAAG 275792 36 100.0 29 .................................... GGGCACAACGACCCCCGCGTAACACCAAT 275727 36 100.0 29 .................................... CCACGAAAAGAAGCCGGTAACGGCATTGC 275662 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 275598 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 275534 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 275469 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 275405 36 97.2 28 ......A............................. CCGAGGCCGGTAGGGTTGCGTGTCTGGT 275341 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 275277 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 275213 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 275149 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 275085 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 275021 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 274957 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 274893 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 274828 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 274764 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 274700 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 274635 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 274571 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 274507 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 274443 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 274378 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 274313 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 274249 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 274184 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 274120 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 274056 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 273992 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 273928 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 38 36 99.5 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAACATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 114517-114861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOMV010000008.1 Bifidobacterium longum strain MSK.11.12 NODE_8_length_125578_cov_471.681, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 114517 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 114583 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [114589] 114667 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 114727 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [114775] 114775 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 114832 27 85.2 0 ..............C.....C....CG | GC,C [114850,114854] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 88.3 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //