Array 1 303367-304054 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059065.1 Pasteurella multocida strain X1053 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 303367 28 100.0 32 ............................ ACATAAAACACCTGTGTTTTTATACAATATTT 303427 28 100.0 32 ............................ CTCGTTTTGTGGATTTGCTTGAGTTGGAACTT 303487 28 100.0 32 ............................ GAACAAAGCAGTAGAAATAAGTGAAGAGCGTT 303547 28 100.0 32 ............................ CAAACATTGTGATAAGCGAATTTAGAAACGCA 303607 28 100.0 32 ............................ TCGTGTCAATTGGAAGATTATCAAAAATACTT 303667 28 100.0 32 ............................ AATGGATAGCATTGCTTATTAGTGAAGATAAA 303727 28 100.0 32 ............................ TTGCACAAAGTCAACGCAACCGCATCACAGCG 303787 28 100.0 32 ............................ ATTTATCGAAACAAGATGACTTCTTTCACCGA 303847 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 303907 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 303967 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 304027 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.4 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1603281-1604328 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059065.1 Pasteurella multocida strain X1053 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1603281 28 100.0 32 ............................ CGCCCTTGGCTTAGAAACGGTCGAAATTAATT 1603341 28 100.0 32 ............................ TCATGGGAAATGAAAAAGAGCCGTTTAACTGG 1603401 28 100.0 32 ............................ ATCAACGCGCACTTTTCCGCCGGGCAATACTG 1603461 28 100.0 32 ............................ GTGAAAATTTTCCGTGAGTTTTCGCGCATTAG 1603521 28 100.0 32 ............................ GCGCTTGTGTTTCTGTCGGGCGCAATAAGATC 1603581 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGTT 1603641 28 100.0 32 ............................ AGAACTTACTGAATTTGATATTAGAAAATCTT 1603701 28 100.0 32 ............................ ATTTTTCACAACGCATCTTTTCCATTGCGATG 1603761 28 100.0 33 ............................ GCACCACGACGGCACGCCACACTGGCACTTGTT 1603822 28 100.0 32 ............................ CACTGTTTTTCTTTTGAGTTTGCCACCCTCAA 1603882 28 100.0 32 ............................ TACTCCTTTGATAGTGTTTAAATGCCGTTTAA 1603942 28 100.0 32 ............................ TGCCGCATTTGTTGGAATAATTCCCATCAGCT 1604002 28 100.0 32 ............................ CCTAGCACGACGACATCACCACTTTTAACTGT 1604062 28 100.0 32 ............................ CGATTTTTTAATCCTTCGTCAATTTCCACTTC 1604122 28 100.0 32 ............................ ATCATAACTGCCTTTAATTAGATTAAAGCACC 1604182 28 100.0 32 ............................ ATCTTGTAGTCGATGTGCTGACTTGAACTCTG 1604242 28 100.0 32 ............................ TGAAATTTTGCGAAAACTGTTGGCAAAACTCG 1604302 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAGTGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTAGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //