Array 1 98259-97961 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQXD01000007.1 Virgibacillus chiguensis strain CGMCC 1.6496, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 98258 32 100.0 35 ................................ ATTGTTAAGAAATTAATAAGTCATATAGTGATCTA 98191 32 100.0 34 ................................ TGGATTCATGGGCGCTATATCGAGGGTGCTTCCT 98125 32 100.0 34 ................................ ATTTCATCATTTGTCAAGATAGCCACATCAGACA 98059 32 100.0 35 ................................ TTTAAATGCACGTAAGTTTCTTGACTCGTTAGCAG 97992 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 100.0 35 GTCGCACCTTTCATAGGTGCGTGGATTGAAAT # Left flank : TTAGACGAGTATCCACCATTTTTGTGGAAGTAGGGATAAAATGTTAGTATTAGTTACATACGATGTAAACACGTCAAGTGATGGTGGACAAAAGCGATTGCGGAAAGTAGCTAAAGTATGTCAAAATTATGGTCAGCGTGTTCAACATTCTGTTTTTGAATGTATTGTTGACGATATGCAATTTGCGACATTAAAAATTGAACTTAGAGAATTAATCGATGAGGAAAGAGATAGTTTGCGTTTTTATCGGTTAGGGAACAATTATAAAACGAAGGTAGAACATGTTGGGGCAAAGGAAACCATTCAATTAGAAGATCCATTAATTTTTTAGTGCGAACCCTAAGTGCACATGAAATCCCCGGGGGATTCGCACCAATTAAATGGAATAATATGGTTTAATTTTAACGAAATTTAGCTGTTTTAGATGTAAATCACCTGGATTCCCTATCATAAAAACCCATTTAATACCACAAAAAGTAATTTTATAGGAAGAAATCGCA # Right flank : GAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTTCATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 213065-212300 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQXD01000004.1 Virgibacillus chiguensis strain CGMCC 1.6496, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 213064 32 96.9 35 A............................... TGGTCGTGCAGCGTTTGTTACAAAACGAATGAACT 212997 32 100.0 33 ................................ TTCGCCGTATGAAAAAGGGTCAAGGCAAAGGAA 212932 32 100.0 35 ................................ TAGTACCTGCGAGCCGGATACATAGGAGTATCCAT 212865 32 100.0 33 ................................ TTGTCCACGTATCGTGGTACGTGACGTGTACGT 212800 32 100.0 35 ................................ CGCCTTTTGCACATCGTTTAATACAAAGTGTTTTT 212733 32 100.0 35 ................................ ATTAAACCCCCTGGATTGTTTTTATTTACGACATC 212666 32 100.0 36 ................................ ACTCATCTCTCCTTCAAAGATGGCTCGCAATGAATC 212598 32 96.9 33 ..........G..................... CGGTATCCCAAGAAGTTATTGATGATGCGGATT 212533 32 96.9 34 ..........G..................... TTTATCTTCGAAACGGATGCCGATTACATCGTAC 212467 32 100.0 36 ................................ TGTTACTGCTGTTGATACATCGGATAATGAAAGTAA 212399 32 100.0 34 ................................ TGGTTGAACTCGTCAATCATGTCGATTTTGCGCC 212333 31 90.6 0 ...........................-.C.G | AA,A [212306,212312] ========== ====== ====== ====== ================================ ==================================== ================== 12 32 98.4 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : GGAAATAGCATTAAAAACAAGAATAAAGATGAAGTTTTAAATATTGATCCAGAATTAGAACTCTGGTACAAAGAATTACCAAGCAATGGAGAGGAGGATATGCGTCGTCTTAAAAAAATTTGGGATGTTTTTAAAGAGGAATAAAATTGGTGTTGTAAAGCTTTCTTCGTTTTAGAATGTATAAGAAATTTTTCTATTGGAGTTTGGTTTCAAAAAGGCGTTCAGAAATTTCCTTTATATAATACGTCAACAGATAACTAAAACTTTCATGACCGCCTTTTGTGTATTCATTAATTGTTCTAAATACAAAAATTTTTACATAATATACTTGGTGCGAACCCCAAGTGCACATAAAAACCCAGGGGGATTCGCACCAAAATCCGCTTGCTTTTTTAATGATTTTTGTAATAATATTGAAGATAATTAGTAATATTTAAGATTTTCAACCTAAAAATGGACTGTTTTTGATTATTTTTGTTAGTTTTTAGGATGAAATCGCA # Right flank : CTGGTATAATAGCCATTTTTAGCTTAAAATAATTCAGAATTATCCACCATATCCTTTATTGAAGATGTTTGTAACTTCCCCCTATAAATTTGTAGTTGCCACTAGTAAACCAAAGTTTTTAGTGATCAAGTATTATTGAAAACTTGCAGGTGTTTCTTAGCCATGTATAGAAGTCTACTATAATAAAAGAGTTAAGGGGAAAGGCGAGTTTTATTATTGCGACAAGAACTATAACTGGGTTATTTACATTTGTTTTATTAATGTGCATTTCAATGGCGAATATCAAGATTTGAAGCACCAAATTGGAAAGGAACATTTTTTTAAGTTCAATGTTAGAGGATATCCTGACGGTGATAACGGAAAAGCCGAATTGTATCTAAGCAAGACAACGTATTCTTTAAATTCAGTAAGCACGAGATGGTATGATTAATTATACTTGTAGCATAGGCATAACATATTAAGGGGTGATTCATTTGAAAAAGTATGCCAACCTTATACCA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 218900-218536 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQXD01000004.1 Virgibacillus chiguensis strain CGMCC 1.6496, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 218899 32 100.0 35 ................................ TTTAGCCAACCAATCAAATCGGTTACCTAAATCTA 218832 32 100.0 36 ................................ TATTTTTGTTACATCAGTAGCCTTATACAATTTATT 218764 32 100.0 34 ................................ CTGAAACTACTCAGGAGCAAATAGAAATGTATAA 218698 32 100.0 34 ................................ TCTCGTAATCCCATCACACCAACAATACTTGGGT 218632 32 100.0 34 ................................ CCATTAGGTGCTACAATCTCAACTGTAGAATTAG 218566 31 78.1 0 .........G...C.......AC-..G.G... | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 96.4 35 GTCGCACCTAATATAGGTGCGTGGATTGAAAT # Left flank : ACCTTATCATATTTATGAATTATTGAGAAGTTACCAATTATCCTAAAATTTCATGAACACATTCCTTCCTTTTGTAAGAACAACATGGATAACCATGCTGCTACTAAAAAGATGAACAAGTAAATGTCAAAAAATATCGTTACTGTGATTTAAATAAAATTGCTATAAGGAAGACACGTATAGTCAAGAATAAGTAATATTGACGTTACAAAAATTTGCAAGCTAGAAACTAAAAAACAGTATTGTACAATTATATTCATGAAATGACTAATTATGAATTATGCCTTATAATGAATACAGAATTATTCATATCATTTCAGTGTACTTTTTTGGTGCGAACCCCAAGTGCACATAAAAACCCTAGGGGATTCGCACCAAAATTCAAGTAATATTACGGTAATATATGTAATATAATTCCATTCACTCAAATTATTTGCGATTTCTAAGCTGAAAACGGGCTGTTTTTTATGGTTTTTGTAACTTTTTAGTGTAAAATCGCT # Right flank : CATCACATAAAACTTCAATAATCATGAAACATCGCTTGTATTTCTGATAGGTCATCCGTCAGAGTAAGTGCTAACATTAACAATATTCTAGCTTTTTGCGGTGACAAGTTATCTGCGGTTATAAAAGGAAAAGTATCAAAACTTTCAATAGGGACAACCCGTCCTTCAAAGCACCGACTACTTCTAACCACTACTATTCCTTTTTGACAGGCTTTTTTTAGCGCCTTCTCCTCTTTTTGGGAACACCTTCCCGCCCCCGTCCCAGCTAACACAATTCCAGAATACTTCCCACTATCAACAATAAAATTAATAATATCTTCGTTTACGCCAGCGTATGAATACACAATGGCCACCTCAGGTAAGTTTCTAACGTTACTATTATCATTAAACACAGATTGAAAAGTATGCTTTCTAGTTGGATATCTATCATATAGCACGGTGTGTTCCGCACTTACATACCCTAGAGCCCCCGCTTTTCCTGATTGAAATGTTCCCAAACT # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTAATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.10,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 229837-229673 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQXD01000004.1 Virgibacillus chiguensis strain CGMCC 1.6496, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 229836 32 100.0 34 ................................ TTTAAAAGAGTATCCTTACTAAAGGATACTCTTT 229770 32 100.0 34 ................................ TTACAAATTTTCTTGACATTATGCATTACCTCCA 229704 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 100.0 34 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : TACAATTATATTGAAAATAAAGGATACACCATTGACAAGAGGTACGGTGAATTAATACCAATTCTTCCTAATGAAGAGCTAAAAAAAATCCTGCAATTGCAGGATAATCAACCATTGCTATTTTTAAAAGCCTTTACAGTGTTTGAAGATGGGAAGCCCTTTGAGTATTCTAAAGTATATTACCACCCGAAAAAATACTCCTTTAAATTCATCTCAGAAAAGAACGATTAACTAGGTAGTGATTCTTTTGTTAATTTTATCATAGTTAAGTGATCTTTATTTTAAACTGTCGTATAATAGAGGTGCATAATTAAAATTAGCTTATTTTTAGTGCGAACCTGAAGTGCACATGAAAACCCCGGGGGATTCGCACCTCTATTTAATCACTTTATGGAAAATTATGGAATTAAAATAACGATTATTTAAGCATTATTATTGATTTACTCTTTTAAAACAAGCACTTTTATACGACTTTTGTAAATTTTTAGGAAGAAATCGCA # Right flank : ATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 235986-235089 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQXD01000004.1 Virgibacillus chiguensis strain CGMCC 1.6496, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 235985 32 100.0 34 ................................ ACTAAAAGAGGTATATACATTAACAACGGAATAA 235919 32 100.0 34 ................................ TTGGTGTTTACGCCATAGAGTCCTGCATATTTGG 235853 32 100.0 34 ................................ TTTTAAAACCCAAAAGTTTAGGTGGAGATACTCC 235787 32 100.0 34 ................................ TTAAACCAACTCATCACATCATCTAATAAAACTC 235721 32 100.0 34 ................................ TGTTGACGTTTCTTTTCTCCTTGATATTCTGTTT 235655 32 100.0 35 ................................ AGTTTGTTCATTTCCTCATTTTGTGGTTTGGACAT 235588 32 100.0 34 ................................ TTGATGCTTGTCGGGACAGTTACGGCAGCACTAG 235522 32 100.0 37 ................................ TTTCCCGTCACTTCGTATAGATTATGCGGATAAAATA 235453 32 100.0 33 ................................ CTCCGTCAAACTGACTGCCTCTTGTATTCGTAA 235388 32 100.0 35 ................................ ACGTTTTGTTAACAAATTTTCTTGCATCCATAATC 235321 32 96.9 34 T............................... GAATAACTCACTCTTATCTGTAAGCGTAAAGTAA 235255 32 100.0 34 ................................ CCAGCGTCCACGCCTACTTTTATTGGTTTCATAA 235189 32 100.0 35 ................................ TACTCTGTTTTTGATTACAGCCGCAGACATGTTAG 235122 32 96.9 0 .................C.............. | AT [235106] ========== ====== ====== ====== ================================ ===================================== ================== 14 32 99.6 34 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : ACAAACAAAAGGCGGATGAAATAAATATTTAGAAATATTTTATTTTTCTGTAACTTGATTTCATTGTTTGAAGATGTTTGCCTAAAGATTGTACAATTCATTCTTTTACACGTTCAAACTAATTTTGTGTTCACTAAACTCGCTTGCAGTGCGTGGCAGATTAGATGGTACTATCTTCATGCATGAAATGACGCTTTTTTTATAAAGTGAAACTTCCATGCGCAGGGCTATTACTACTTGGCATGACTTATTATTTGAACTATCATATAATATTTTTAGATAAAATATGGTTTATTGGAGAACTTTTTTAAGAAACGAAATTAAAAATTAGGTGCGAACCCCAAGTGCACATGAAAACCCCGGGAGATTCGCACCAAAAATCACTTGCTTTTTTGGTGATTTTTATAATAAAGTTGAGAGTAACTAATCATATTTGAGATTTCTAATCTAAAAATGGACTGTTTTTGATTGTTTTTGTTAATTTTTAGGAAGAAATCGCA # Right flank : GTATTTTTCTGCCTGCGGTTCGCCCTGATCGTAACTTGTACAACCGTGCTAAACGCACTCGTTAACCCTAGCAGACATGAAGAGTACATATGTCTAACATCCCTGTTTGTTGACTAAAAGTCTAACTTTATTCTTATTTATAACGTCATATTATTGAACGGCGACATACACAATCTATGGTGTACATATTCATTTTCATTTTCTTGTCTTGACGCGTTTTTTCTATTTTAATACGCGACTTTCTTGCTTTATTGCCCAACTTTCTCAATGCAATGCGCGTTTATCCTTACACGGATTCATTGCGCTCTTAAGCTTTACTCATTTTATTACAATACCTTTCAGATAACAGCAAAAAATAAGTGTAAAATTATAGTTCTCACCCAATTTTACACTTATTTTTTATACGACCTTACTTCTCTATCTGCTTTTTAAATTCAGTCAAAACTGTTCCCGCCTCAGGACCGATAATAATTTGGATATGTTTATTATCGACTTTAACT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //