Array 1 265692-263676 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTMT01000002.1 Veillonella sp. AF13-2 AF13-2.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 265691 36 100.0 30 .................................... GTAATGCGCATGATGCTTTTTGGCGATTGA 265625 36 100.0 30 .................................... TAACTATATAACTGGGGAGATGTTATTATG 265559 36 100.0 30 .................................... AAAGCTGCATCTGTTTCATTAACTGCAATA 265493 36 100.0 30 .................................... CCTTACCTTTTAACTCATCACGTGCTGAGG 265427 36 100.0 30 .................................... CTCTAGCTTTTTGCCTTTCGTACTCATCGA 265361 36 100.0 30 .................................... GAGGACGTGCAGAACGAGAAGCCTGGGGCT 265295 36 100.0 30 .................................... TATGCCCAGATAAGATATCTGTTAGCGCTT 265229 36 100.0 30 .................................... AACTGGCGGTAAGGTTATCGGTGGTGTACT 265163 36 100.0 30 .................................... AATCAAAGATTACAAATATCGCTAAGATGT 265097 36 100.0 30 .................................... ATGAATTAGGAAAGATTTCAAATCATTTGA 265031 36 100.0 30 .................................... ATATGGTGCTAAAGTTATTATTAAGGATGA 264965 36 100.0 30 .................................... CTACCAATACCCCAGTTAAAGCCAGCTCTT 264899 36 100.0 30 .................................... TCTTTGCTTCATAGTATCGAACGTCTTGAT 264833 36 100.0 30 .................................... TCCATAGTAGACTCATCAGGTACCTTAAAA 264767 36 100.0 30 .................................... AGAAAATTCAACAACAATTTAAGAATGATA 264701 36 100.0 30 .................................... AAATACAATGCTACTAAAAGCTATTCTATT 264635 36 100.0 30 .................................... TTGAAAATAAAATAGTACATTTATAGAAAG 264569 36 100.0 30 .................................... TTGAAAATAAAATAGTACATTTATAGAAAG 264503 36 100.0 30 .................................... TTGAAAATAAAATAGTACATTTATAGAAAG 264437 36 100.0 30 .................................... CGGCTCAAGCATTGGTTGCTGTTATGGCAC 264371 36 100.0 30 .................................... GGTAAGTTCATTATTATCGCCTCCACGGTG 264305 36 100.0 30 .................................... TCATCGTATTAGTACCCAAACTAGACTGCC 264239 36 100.0 30 .................................... TCTGGTTTCTCCACATCTTCTCGATACGGC 264173 36 100.0 30 .................................... AGTATTGCTTAGTTGATACATTTTGCCCTT 264107 36 100.0 30 .................................... TCCAGGATCGAACTGCTGAATGGTTACAAG 264041 36 97.2 30 ......................T............. CGTTTCTTTAATCCCTCAATTAAATTAACA 263975 36 100.0 30 .................................... TAGCCATTGCCCCATAGTATCCCCCATGAC 263909 36 100.0 30 .................................... AAGCCGGATATTGCACACACAACTTAATGA 263843 36 100.0 30 .................................... GTAGTAGCTCAAAAGGGAACTGCTACCGAA 263777 36 100.0 30 .................................... TTGTCTAAAAGCCTACAAAAAAACCACCTA 263711 35 83.3 0 ...........T...G..CG..-...........T. | T [263686] ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.4 30 GTTTTAGTACTCTGTAATTTTTCGCTATGATAAAAC # Left flank : TAGGTTGGGGGTTCGATTCCCTCTAGGCGCACCAGAAGGATAGAGCTGCAGTTTCGCCTTAATACTCGTGAGAATCTATTAAGGTAGGGCCTTATGCCGAAATCAAAGGACACAATTTATTGTGTCCTTTTCCTATTTTAATCATATTAAAACTATCTTTTTATCAAGATAATAGTTGAGTAATTATGGTTATTTAGTAAAAATTAAAACTGATTGATGAATAAAAATTAGAAAAGCTTGACATATAAGTAATGCTGATATATTATGTAATTAGATTTTACCATAGCGAAAGGTTACAGAATCTACTAAAATAAGACTTTATGTCGAAATCACTACTTTTAAGTAGTTATTAACAATAGTATATGTAAATTGAGTTAGTAGTACATATTACTAATGTTTTTTGTGTGAAATTTTGAGCACGGGTCTTATGATCTGTGCTCTTTTTGTTTATTGATTTATTATAGCGAAAGGCTACAAAAGTACTTAACTTCGTTGTTGAG # Right flank : TAGAATAATAGAGGAGAATAATTTTTTTAATTATTATAATTTTATGTATTAAATAGGATTAATAATTTTTAGGGGAGGGTATATATGGGATATATACTAGGATTAGATATCGGAGTTGCTTCTGTTGGTTATGCAATTATTGATGAAAATTATAATGTCTTAATTAGTGGCGTAAGACTATTTCGTGAGGGTACGGCAGAAGAGAATGTAGCACGCAGAGGGTTCAGAAGTAGTCGTAGAAGTATGAGGCGGAGCCGTCATAGATTGGATCGACTAAAAGAACTCTTGTCGAGTGCACTAGGTGTGAGTGGAGATCAATCTTATACAAATCTCTATGAAATTAGAGTTAGAGGGCTTAGTAATAAGCTTTTGCCTGATGAATTGATTGCTGCAATCATTCAATTGGCTAAACATAGAGGTATATTTTATTTAAGTCCAGAGGATCTTGCGACTGAGGACGGAAGCAACCGGAGTTCAGCAGATATTATTCGAACTAATGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTTCGCTATGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 319097-318005 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTMT01000002.1 Veillonella sp. AF13-2 AF13-2.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 319096 36 100.0 30 .................................... TAACACCTAAACCAGTTAGATATACTATAT 319030 36 100.0 30 .................................... GGTTGTTCCCATCATTCCACCTCCTTTCTT 318964 36 97.2 30 ..........................T......... ATTAGTAATAGTTTAGAGCATGAGTTATGT 318898 36 100.0 30 .................................... CTATTTAATCACGATCGGACCAGCGCGCAG 318832 36 100.0 30 .................................... TTAGAGTTGATACGGATATCCTCAATCTTA 318766 36 100.0 30 .................................... AAAGAAGATGCATTTAAGCGCAGGTGGAAT 318700 36 100.0 30 .................................... AATACACAATATTCCTCATTAAGTGCGCCG 318634 36 100.0 30 .................................... AACAGATTCTTTTGCAATCCCATATACGCA 318568 36 100.0 30 .................................... AGCTTCTGCACCGAATTTGACAATACCTCC 318502 36 100.0 30 .................................... TGGACCAGCACCGTTTAAGCTGCCTTTGTA 318436 36 100.0 30 .................................... TCAGTCAATTTCATTTGGCCGTCTGAAGAT 318370 36 100.0 30 .................................... TGTCGGCGTGAATAGTGCTAATGGTGGCTC 318304 36 97.2 30 ..........................T......... TATCGTCATATTTCAGCATTAGTTTTACCT 318238 36 97.2 30 ..........................T......... AAGAAACCAGAGAAACCATTTAATGACGGT 318172 36 97.2 30 ..........................T......... ATCGCTACAAAATATAGCTGTGGCCGTGTA 318106 36 97.2 30 ..........................T......... CGAAGCCTATTTCTGTAAACTCAGTATTTT 318040 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.0 30 GTTTGAGAGTAGTGTAATTCTGTAAACCTCTAAAAC # Left flank : AACCAAATTACAAAATCAATTATCTAAAGAAGCCTTGTTGATGACAGAAGAGGTGGCAGATATTGTAAATCGTCTTCATGCTTTTTATTATTCTTTAGAATTTGGATATCCTTTATCAATCCAACATAAACTTGAAATTGGTACTGCTGAACTTATTAAGTTAGGTAGCTTTAACTTTGAGTTTAATCGTACAGGGGATATTATGGATTTCATGTCCTACATAGAAGTGGTTGATACATTATTATCTCCCATGGTATATATTATGGTAAATCTAGATTTAGTTTTAAATGATGATGAGATTAATACATTTTATCACAACATGTTGAGTAGACAATTACGATTAGTTTGTTTAACGACAGGATCTTTTGTTAAAGAAAATCTTGATAAAAGTCTTATTAATGGGTATATTTTAGATAATGATTTTTGTGTTATTTAAGGAGTATACAGAATTACACCTGGTGGTAGCCCGAGTTACTCTTGAGCCTCAAATTTAATTTGGG # Right flank : GAGCAAATTAGATCCTTCTTTAAAGATTTGGTTTGAGAGTAATGTAATTAGAATTTAGTAGATTATAAATTTGTGAAACGACATAAAAAGCCGAGCTACCTTATTTTAGTAGTTCGGCTTTATTTGTTAATTTATATATTTATATAATATGATGCTTATTGTATCGTATATTAGTTCGCTCTATAATAGATTTAGGATAGTTAGACGAGGTTGGGACTCTCTTCGTTTTTGAAGGGAGGGATAAGTCTATGAGTGATTATGAAGTAATCATGCTCCTGTTACAAGTAATGGCTATTGTTATTGCTTTTGGGGCTTTAATAGCACTTATTTGCCTTACAAGAAGCAAATAGCCCTCCGTTGCCTAGTGTAACTAGATAACTGAAAGGCCATTTCCTAATGTTTTAATGATTTAGAGATGAGCCTGACGGCACTACTCGTCTGACTATCTATCTATATTATAGTAAGGTTATTTTATATCGTCAAATTGAGATGAACCTTAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATTCTGTAAACCTCTAAAAC # Alternate repeat : GTTTGAGAGTAGTGTAATTCTGTAAATCTCTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.00,-1.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //