Array 1 1727733-1728632 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913023.1 Desulfitobacterium sp. PCE1 DesPCE1DRAFT_Scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1727733 32 100.0 34 ................................ CTACGCTTGCACACGTATGAGGCCATACCTTTTA 1727799 32 100.0 33 ................................ CAGTCGCCACTTTTATACTCAAATTTAAGTTTG 1727864 32 100.0 36 ................................ CCATCAAGGTGTCGAACTTTTGGGAAGCCTCTTTTT 1727932 32 100.0 34 ................................ GGTCCAGTCCTCTCTGTCATGGTGAGCTGCCATG 1727998 32 100.0 35 ................................ AATAACGCTTTAACTTTATGGGAAAAGGTGATTGT 1728065 32 100.0 37 ................................ ACGCAAAAGAAGAGCGCAAAAGAGCCTTCCGTGGTAC 1728134 32 100.0 35 ................................ TTTTGTAAGTCTCTCCAGCTGAGTGACATCGATAT 1728201 32 100.0 35 ................................ TGGTCTACTAGCTTCCTGAAAAAGCCGTTAACCAA 1728268 32 100.0 33 ................................ CGGGTCATAAAGGAACTCCTCATCTTGTGCGAC 1728333 32 100.0 33 ................................ TCCTTTAGGTAAGCAATCTCCCTTGCCCGTTGT 1728398 32 100.0 35 ................................ CAGCCATGGCCTCGCTTGACGTTAAGGGTATCCCA 1728465 32 100.0 36 ................................ ACATACTCTTCAGGAGTTTGCTCAAGTCCAATTTGG 1728533 32 100.0 36 ................................ CTTGGCTCGTTGTTTACCATTTCCATGATTTCTTTT 1728601 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 100.0 35 GTCGCTCCCTGTATGGGAGCGTGGATTGAAAT # Left flank : TGCGCCTTCGGTCATTTTTATCATTCCATGGATGTTGCCGGAACCGTTTTGGAAGAAACTTGGCAAGCCATCGATCATGTTCATGACGAACTGCACTCCAACGGCAGCAAGGTCATCGAGGCCGTCAATGAAAATAAACCGGAATTGGCCAGGGAACTGTTTTTACATACGAAAGAGCTATCTCAGGATATTTTCGCCAGATTGGATGAAGTCAGCCATGTCATAGAAGACAGCAGCGCTCAAGGGGTGGAGATCTTGAGAACCAGCAAGGCGAGCTGAGATAGAAAAAGATAATTCTGCGGTGAAACACAACACTCATGTCGCTTATCAGGTGCGAACCTGTAGTGAACATGAAATTGCTGGGGGACTCGCACCACGAAATGTGAAGAAAATTGTTGAGATGCAGAAGATATAGTGGTTAAGATTCGGTCATTGGGTAGAATAGTTTGAAAAAGTAAACAAAAATGCGTCTATCTGATGATTTTTGTTTACTTTTTGCT # Right flank : TTGATTGATAATATAGAAGAAGTTCTTAGGTTGCCAATCCTCATAAAAGCATCTCGCAAATGAAGGGAGTACTTAAAGTGAGGAAGAGGCTGGTGATGTAACCTGGGAAAGCCCGGTGATGCAGGAAGAAGTCTTTGGGCCCCTGCTCCCGGTGCTGGAGTTTGAGAACTTTGACGTTGCTCTTTCCTCGGTCAATCAGCATCCCAAGCCGTTGACCTTATATCTATTTACCAGAAGCAAGGACCATGGGGCTCAGGCCATCCGCGAAACTTCTTTTGGCGGCGGATGTATTAATGATACCCATCATCCACCTGGCTAACCCCAATCTGCGCTTCGGAGGTGTGGGAGAGAGCGGCATGGGGCAATATCACGGCAAAGAAGCTACGATACCTTTTTCCATGTGAAAAAGCATTATGAAAAAATCCAATATGCTGGATATCCCTCTCCGGTATCCGCCCTTCAAAAATTTTTGTCCCTGCTTAAGAAGCTTATGAAGTAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTGTATGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1738157-1739539 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913023.1 Desulfitobacterium sp. PCE1 DesPCE1DRAFT_Scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1738157 32 100.0 36 ................................ TCTGGCCGGAAGATGTTCAATTGCTTGTTCGATCCG 1738225 32 100.0 37 ................................ TCGCTGTCCGACGTTGACATGACCACAGCAAGCGATT 1738294 32 100.0 38 ................................ TCCGAATTCTTGGAGCTCAACCTCGAATTCAGTTTTAA 1738364 32 100.0 34 ................................ TCCCTGGATAAAATCAGCGTAATGTCTCGCCGCA 1738430 32 100.0 34 ................................ CGTAGGATTCATACAGGCCATCGATTATGGTTTT 1738496 32 100.0 36 ................................ TCTAAATGTCTGTAAAAACGAACTTCAAGAGCTAAA 1738564 32 100.0 36 ................................ ATTGGCCGCTTTGTTTTCGCCTTGGAGCTTTTCAAT 1738632 32 100.0 36 ................................ TTAGGGGTCTTAAGGGAGACCTAACATCGCCTGTCT 1738700 32 100.0 38 ................................ CCGTACTTCACCAGGCAATAATCCACATAAGCCCCCAG 1738770 32 100.0 38 ................................ TTTAACTCGTATACTTGTTGCTTATTTAATAAACTTGC 1738840 32 100.0 37 ................................ CTCATAAGCCGGGAAAACAACGATACTAAATTCGTAA 1738909 32 100.0 33 ................................ CCAAGATAGTGGCATCCCCGGCATTGCGGTTAT 1738974 32 100.0 33 ................................ AAGTTAGTCAATCCAATGGCCCATAGCGTTTAC 1739039 32 100.0 36 ................................ GAACCCGGTGCACTGCAGGAGTTGCAGTTGCCTTGT 1739107 32 100.0 34 ................................ AGGCGCGGGTCTTGAACCGCTCCCACAGCATTGC 1739173 32 100.0 36 ................................ TGCACAACTAAGATCGCTAGATGGCTCAAGTTACAT 1739241 32 100.0 35 ................................ TCCAACATCCCTCCTGAAGTGGTAGTTCCTTCTTT 1739308 32 100.0 38 ................................ ATTTTTGGTGGATTATTTAAACCTTTGAAATCAACACC 1739378 32 100.0 33 ................................ CAAATGGAAAGTGCCAGTACCCCTATGAGGTAT 1739443 32 100.0 33 ................................ TGATACCACATACTATACACTATTAGGAATATT 1739508 32 84.4 0 ......................A..A.C..CC | ========== ====== ====== ====== ================================ ====================================== ================== 21 32 99.3 36 GTCGCTCTCTACGTGAGAGCGTGGATTGAAAT # Left flank : GGACGGATACCCAGCTTTTATGTGGAAGTAGGTGAGAAAGATTTTAGTGCTGATCACGTATGACGTCAATACTCAAACCGCGGCAGGAAGAAAGCGGCTGCGTCAGGTTGCGAAACAATGTGTGAACTACGGGCAGCGTGTCCAGAATTCAGTCTTTGAGTGCGTGCTGGATGCGGCAAAATTCCGTGAGGTTCAGCATAAGCTTGAGCAGATTATTGATACGGAGACGGATAGCTTGAGATTCTATATGCTGGGGAATAACTATAAGAATAAGGTTGAGCATATAGGAGCAAAAGCCTCTTTTAATGTTGAGGATACCCTGATCATTTAGTGCGAACCTATAGTGCACATAAAATCCTCGGGAGGTTCGCACCGCCAAACGAGAGGAAAATTGTTGAAATATAGGGGAGAAATAATTGATTATGGTAAGGTATTGAGGGAAAGTTTAAGGAATTGAACAGAAATGCCATCCGATAGATGATTTTTGTTTACTTTTTGCT # Right flank : CCCGGGTCAGAATCTTCATCGATGAAGATTTTGCCATCTTTCCCTGATGGAAACGTGGCTACCTGAGACCAAAGCTGCAAAAGAGAATCTCAAATCAGAATACAAGGCCTAAAGCAATCAAAATGAGGATAGAAATGGCAATTATCGCTATACCAGCTCCGCATAAAAACATAAATTCAACCCCCTTTAGTTTATATATCATCATATGCAAAAAATATTTTTATGGGATATTATGGTAAAGACAAAGTTTTAAAAGAGCGTTTAAAACGCTCTTTTTTCTTTATTTTTCACGATGTGTCACCATTCGTGAATTTTTAACTTTTCCGTAAGAATTTTTAAGGTTTTTGTAAAGCACTGCAACTCAAAACTTGGTAAGGTGAAGAGGAAGAAATAGCTATGACGGCAAGATCCGGAGCCTGGCACAAGTGGAGAGTGAAGATGAAATGAATTGCAGCACAAAAACGAATCAATTGTATGAACAGCCGAACCGACCGCAAAGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTACGTGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //