Array 1 839-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGCR01000257.1 Bacteroides fragilis str. 3774 T13 gbf3774T13.contig.262, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 838 36 97.2 36 ..........................T......... TGAAAGTTCGCGTCAAGCTCACACCGGGACAGGAAA 766 36 100.0 33 .................................... TGACACAATTAATATGCGTACCCAGGCATATTT 697 36 100.0 35 .................................... CAAAGCGGCACAGTCTCTGGTTCTTAGAAATTTGT 626 36 100.0 32 .................................... GAATTGGCGTAACCGGCTTCTGGAAAAAGCGT 558 36 100.0 36 .................................... AAGTTTTTGTAGAAGGAAAATTTAACTTTGATTTTC 486 36 100.0 32 .................................... AAATGTGAAGAATTCCTAACCAATGCCGAGTT 418 36 100.0 36 .................................... GGCCTTTTACCAGAACACCGCAACAGAGCATGTTAA 346 36 97.2 33 ...................................T TTTTCCTGTCGCAAAACTCATCAGGGATGGCTT 277 36 100.0 33 .................................... TTACGGAATTTTTATGATAGACAATGCTCCAAA 208 36 97.2 34 ...................................T TTCTTAGTCGTTGAATCGGAAATGCTGGACGCTC 138 36 100.0 36 .................................... TCAGCAAAAGAGACATCAGAAATTATGATATATATG 66 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 12 36 99.3 34 GTCTTAATCCTTATTATACTGGAATACATCTACATA # Left flank : TAATATCCAAAGCATCTACAATGTAACTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : AAAAACGGGAGCTGTTTCTGACCTAATAACT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 1100-2218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGCR01000329.1 Bacteroides fragilis str. 3774 T13 gbf3774T13.contig.336, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1100 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 1177 47 100.0 30 ............................................... AAGTACAACATCGATACCGATACCCTTTCC 1254 47 100.0 29 ............................................... GATCGTGTTTGCGGAGCATTACCAAGAGG 1330 47 100.0 29 ............................................... GCTATGTTTGTCGGAGCAGTAATAACGTC 1406 47 100.0 30 ............................................... GTCGAGTCCTACCGTAAATTTGGTGTATAC 1483 47 100.0 29 ............................................... GGATTAATTTTAAACCAAGAATAAGTTAA 1559 47 100.0 29 ............................................... AAGTTTATTGAGGGTCTTTCTAACATTGT 1635 47 100.0 30 ............................................... TTCGTATCAATACCGATCTGACGAACATTA 1712 47 100.0 30 ............................................... AACTACCACCAAGGGCCTTATTGTTCATAA 1789 47 100.0 30 ............................................... ATCTTTGTTCCAATTTGCATACCTAAGCTC 1866 47 100.0 30 ............................................... GAAAATCGGCCGAACGGCTTAAGATGGTTA 1943 47 100.0 29 ............................................... TTCTGCAAACACTCAGCTGCACGAAGTTG 2019 47 100.0 29 ............................................... TTTGCAACTGTATGCGCTTTTCCTCAGGA 2095 47 100.0 30 ............................................... TATACAAAGGTTCATGTCGTAGCCGACAGC 2172 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 15 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGGATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //