Array 1 252713-251120 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVI01000003.1 Chromobacterium violaceum strain NCTC9757, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 252712 28 100.0 33 ............................ CTCACGGCACATCAACGAATAGAAAGGACAAAA 252651 28 100.0 33 ............................ TGATCTTGGTAGGTCGCCTGGATCAGGTAGGAG 252590 28 100.0 32 ............................ TACTGCTGGGGCGCGGTGTTCGCGCTGGCCGG 252530 28 100.0 33 ............................ AGTCATCGGTGCAGAGCATCGCCAACGCGACGG 252469 28 100.0 32 ............................ GACCGGGGGCGTCACGACGGTGTCCGGCATCG 252409 28 100.0 32 ............................ CATCCGTCCGGATCGCCGTAGCTGGCAAACCC 252349 28 100.0 32 ............................ AGCACCGCATCCTCAAGGCGGCATCGGTTTCA 252289 28 100.0 32 ............................ ATCTGCCGCCCTGCCGTGACGCGCCCCTTCGC 252229 28 100.0 32 ............................ TGTCCAAGACGCCACGCATACGTGATGTTCAA 252169 28 100.0 32 ............................ GCCCGAACCGCCATTGAGCGTAATGCTGACTC 252109 28 100.0 32 ............................ TGCGCAATTCAACCCTGCTGCGGCTGTTGAAT 252049 28 100.0 32 ............................ TCGCCCAGGTGAGTTCGGTGTCGATCACAGCA 251989 28 100.0 32 ............................ TCCAGCGCGCTGGGCAAACCCAACTACTACGG 251929 28 100.0 32 ............................ ACACCCAGACACCCATATAGACGTCACACCGA 251869 28 100.0 32 ............................ AGGTCAGCCCGCGCTCGCTCTCGCTCGAAAAC 251809 28 100.0 32 ............................ TACCTGAAACCTGGCCATTTCATGAACCCAGA 251749 28 100.0 32 ............................ AATGCCAATACCGGCAGCAAAACAATCAATCT 251689 28 100.0 32 ............................ ACCTGGAGAGCAAAACCCACTCGAAAGCCCCA 251629 28 100.0 33 ............................ CGGAACCATCACAGGCAATGCACGGTCGATGAC 251568 28 100.0 32 ............................ TACAGGTCGCAGGTAAGCCATCCAAGCGTCAG 251508 28 100.0 32 ............................ ACACTCGGCCGCGCGGCAGCAAGCGCTGCAGC 251448 28 100.0 32 ............................ ACCGCCGTAATTGGTCCCGTTGTTTGCTGCGC 251388 28 100.0 32 ............................ ATCTCCAAAATGGAAACAGGCCATTTCTGGCC 251328 28 100.0 33 ............................ ATGAAATTATGGGTGACGCCCAAGGAGCGTGAG 251267 28 100.0 32 ............................ CACCTCCAGGTCCACCGGTCTACTGTAAATCG 251207 28 100.0 32 ............................ ATCCAATGCCAAGGGGCTGTGAACTTCGGCAT 251147 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 100.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CCGTTGGCTCAGCGGCTTCGCCGACCACGCCATCGTCGGCGACATCCGCCCCGTCCCCGCCGGCGCAAGCGCGGTCAGCGTGCGCCGCCGCCAGGCCAAGAGCAGCCCCGCGCGCGCGCGCGACAGGCTGATGCGCCGCCAGGGCATCAGCGCGGAAGAAGCGCGCCGGCGGATACCGGACGAAACGGCGCAGCGGCTGAACCTGCCCTACCTCACCGTAGACAGCGCCAGCACCGGCCAATGCTTCCGGCTGTTCGTCGAGCAACAGGCCGCGCCAAGCATCGCCGCGGGCAGCTTCAATGCCTACGGCCTCAGCGCCGCCGCCGCCCTGCCGGCTTGGTAGCCCGAAAGGGTCGCGGCCAGGCCCGCGACCCTTTTCTCTCCCGCCAACCTCCACCTTTTAAAATCAGAGACTTAACATCATGCCGGCAAAAAGGGTTTTGCCGGCAGAAATGGCTGACAGCCTTGCCGAACAAGGCTGATGGGCAATAAGATCTCTA # Right flank : GTAGTACGCACGTCCGTCATTCCGGAGCATTACGCGCTGCGCCTGGACACCTGGATCACCATGCACGAGGACCTACGGCACAATCCCGCCTGCAAGGCGGTGTTCAGCGCGCTGGTGGGAGGCATGCGGCGGCATGCCGGGGATGTGTCCTCCGGCGGCTGTCCGCCATGAAAAAAGCCGTCCCGGCATTGACCCGGAACGGCTTCTTCGCAGCCGGCCGCCCTTACTTGGGCGCTTTCGCCTGCGGCAGCCGCTGCAGCAGCGCGAAGGTCATGTTCTGCTCGCGCGGGCGGTTGCCGGTCCACAGCACCTGCCAGCCTGGCTCGGCCACGCCCTCCTCGCTGCTGCGCACCACCAGCCAGTAATCGCACGGCGGCGTCTCCCCGGATGGGAAGGACAGCAGGTCGATGCCGGCGTAGTAGCGCCAGCTGATCATGGCCAGGCTGTTGCGGTTTTCCGTCGCGATGCAGGTGGCCGTGGCAGGCAGCTTGCGCAGCATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 191347-190154 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVI01000005.1 Chromobacterium violaceum strain NCTC9757, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 191346 29 96.6 32 ...........A................. TCTGGCCTCAGGGCCATCGACATGGCCAAAGC 191285 29 100.0 32 ............................. ATGGGATAGTCGCCCAGGAAATCGAACACCAG 191224 29 100.0 32 ............................. ACGTTATTGCCTGGCAGGCCCAGTTCCGCAAA 191163 29 100.0 32 ............................. CCTAAAGACCTAGTCGGCCAGCCCTGGCGCTT 191102 29 100.0 32 ............................. CCATGTGCGCCGTATCGCATCTTTGTCGCTTC 191041 29 100.0 32 ............................. GCTGATCCGAGTTTGCCGCCGCCGCATCAAGT 190980 29 100.0 32 ............................. CGAGAGGACCGTCCCCGCCGAGGCGTTACCTA 190919 29 100.0 32 ............................. GGCCGGTTGGAGAGCCTAGGCGTTAGTGTCTT 190858 29 100.0 33 ............................. GAACCCGGCCTGCACCATCATCAACGAGACCAG 190796 29 100.0 32 ............................. ACCGGCCACCACCTGGCCGCCAGCCCGGTTCC 190735 29 100.0 32 ............................. GTTACAGATCTTGGTCAGCTGGTGGCAGGCAT 190674 29 100.0 33 ............................. CACTGAGGCTGAAAAACCTTGGCCTACTCTGCT 190612 29 100.0 32 ............................. GTGGAAGCGTCGATCTTGTCGGTCGTTGCGAT 190551 29 93.1 32 ............CC............... ACCTATTTCTACATAGACTGTATGTAGCAGAG 190490 29 93.1 32 ............CC............... TACGCGCTGCCGTGGAACAAACAGCGGGAGGG 190429 29 93.1 32 ............CC............... CAGCTGGTTCGATACGGCAATTCGGGCCTGAC 190368 29 93.1 33 ............CC............... TACATCACCATCCACGGCGGCGCGAACGTCGGC 190306 29 93.1 33 ............CC............... TAGTAATGGCCATCTGGTGCTCTGGGAACAAGA 190244 29 93.1 33 ............CC............... GGCATGACCGGATTTCGCATCGACAGCCGGCGC 190182 29 75.9 0 ............CC......A...TG.TT | ========== ====== ====== ====== ============================= ================================= ================== 20 29 96.6 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAGGGCCCGCCTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGTTTCGCCGACGGCAGCCGGCTCACCGCCAACTTCGGCCCCGCGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTGGCGGATTGCGCTGGCAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGTCGTGGCGCGGCGGTTTCCCATGGCCGGCGAGCGGCATTGCCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTGGGGTGGGTTTTTGTCTTTAAAAATCAGCATCTTGAAATTGGT # Right flank : CTGCCCGTCTATCGCTTGCTTAATCCACGGCCGTCGCGTTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGCTGGCGCTGGCCGGCCATTCTCGCCGGTGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTGGCCGGCGCGGCAGCGTTCGCGGGGATAGAGGTGGTCAGCGGAGCCGTCGGCTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 199944-198630 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVI01000005.1 Chromobacterium violaceum strain NCTC9757, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 199943 29 89.7 33 ...C........C...............A GCAGAAGAAAGCCGACAAGGCAGCGCCCGCCGC C [199933] 199880 29 93.1 32 ...C........C................ GAGGAGTACGAGGCTGCTCGCCGGTCGACGCA C [199871] 199818 29 93.1 32 ...C........C................ CCGACCGGATCCCGCGCGGCGTCTGAATCGAG 199757 29 93.1 32 ...C........C................ TCGCCCATCTCCTCGCGGCGATGCTTCTTGCC 199696 29 93.1 32 ...C........C................ CGCCGGCCTCGCAGCCGGCAAACCGCCGAGTC 199635 29 100.0 32 ............................. GGTGGGAATCAGCCGGGCGCGATTGTGGGCGT 199574 29 100.0 32 ............................. CTTGAGAGCAATCCGTTGACCTGGAAACCGAT 199513 29 100.0 32 ............................. CTCCATGGCCTGGCCGTAATCGATGGCATTGA 199452 29 100.0 32 ............................. AAATCCACCACCGCGACCGATAGCGCCACCCG 199391 29 100.0 32 ............................. TTCACGGTGAGCACGCCCTCGCAGGTAATCAG 199330 29 100.0 32 ............................. TGATCCGGGCGGAATACAACCACCACGGCCGG 199269 29 100.0 32 ............................. CTCCAGACTGGTCGTATACACCTGACGGATAT 199208 29 100.0 32 ............................. AGCTCGCTGAGCTGTTCCGCCTCATCCTCGTA 199147 29 100.0 32 ............................. GCTGGCACGACGCTTGGCGCGATTGTGAAGAA 199086 29 100.0 32 ............................. GTCGTTACTGCAACGGAGGCAAAACAGCATCA 199025 29 96.6 32 ............C................ TGCGGCAGACCAAGCCGACCGACAAACCGGTC 198964 29 96.6 33 ............C................ GCGAGACGATCATCTTGCCGCAACGGCGCGGAA 198902 29 96.6 32 ............C................ GCCTCCCACTCAGCAGGGCCCGCCGGCTCGTG 198841 29 96.6 32 ............C................ TCGTCGATCTCTATCACACCGGTCGCCGTGGC 198780 29 96.6 32 ............C................ CAATCGCACCAAGGCGTCGGCCGACAACATCA 198719 29 89.7 32 ............C............G..A AAGCCAGTGCCTCAAGGCTTGAGGGTTCGAGA 198658 29 69.0 0 A.A.........GTT..........GTGA | ========== ====== ====== ====== ============================= ================================= ================== 22 29 95.6 32 GTGTTCCCCACGTACGTGGGGATGAACCG # Left flank : TGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGATGCCACCGCCAGGCTCAGCGGCTTGCCCGGGCCGATCAGGTGCTGCTGGCCGATCACCTGATCGAGCGCCTGAGGACGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTCGGCGGGATGGGGCGGAGAAACAGTATACCAGTTGGGGACAGGCATGAAAAAAGCGCCGGCCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTACGCTATGGCTGCTGACCTAGCCTAAGCCTTGCTGTTGAGGAAGCTTGGCGTTCAGCATCAGGGGCGAGCAGTGTCGGACCCTTGTGCATGGGACGATTTGCCAAGGCCTGGCGGGGTTTGCCGTGCTGATTTGAACGCCGCTTCATGACTGGGAAAATCGGTAGAATTTTAGATCGGGTTTTTGTCTTTAAAAATCAGTAGCTTGAAAATGGT # Right flank : CGGGGGACGGCTGGAGTGGCGTCGCGGCGCTGCCAGTCCGGCCGCGTCCGGCAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTTCTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTTACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGATCCAGCACCACTACGTCGAACTTGTCGT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTACGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 359343-357568 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVI01000005.1 Chromobacterium violaceum strain NCTC9757, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================================== ================== 359342 32 100.0 54 ................................ CTTCTGGTCGCGCAAGCCAAAGCCGTCCACGCGCGTCGCGCCCAACGCGGGCGC 359256 32 100.0 35 ................................ TGCTCGTATGCTGACATGTGCGGTCGTAATATTGA 359189 32 100.0 33 ................................ GGCTGCTTCCTGGGCGCGCTTGCCGGCGAAGAT 359124 32 100.0 35 ................................ TTGTCAACGACGCTAATCGTCATCCCCGGCGAGAG 359057 32 100.0 34 ................................ TTATGCTCCGGTGCCGCTGCAAGCTGGCGACCTG 358991 32 100.0 34 ................................ TTCAACACCGACCTGGCCGAGGTCTACATCCCGG 358925 32 100.0 36 ................................ ATAAGTTGAGGCCGACTATACCAGCGAACTGGCATA 358857 32 100.0 34 ................................ GTACCCGTGTTGTCCGAACCACTGCTGCCACCGC 358791 32 100.0 35 ................................ TCCCGCCTCTCCGTTGGTGAGCGGAGCCTGCCGGG 358724 32 100.0 34 ................................ ACCACCGGCGGCGCTGCGCCGTCGCTGCCGCCGG 358658 32 100.0 33 ................................ CCTTCAACGCCGCCGCTTCTGTGTTGCGCCTCT 358593 32 100.0 35 ................................ CGATGCATGCGCTATCACGGCGAGCTATATATCCC 358526 32 100.0 36 ................................ AATGATTTCGCCAGCGATGAAGAGCGCGGCGAGATC 358458 32 100.0 36 ................................ AATGATTTCGCCAGCGATGAAGAGCGCGGCGAGATC 358390 32 100.0 35 ................................ ATCGTCTCACTCCTTGATGCTGCTCGGCACCGTAC 358323 32 100.0 34 ................................ TCGACACGCCGGCGTCGGGCTTGGATGCCATGGC 358257 32 100.0 33 ................................ TGACGCCCCCAGCTCATCACCGATGCGCAGCAA 358192 32 100.0 34 ................................ GGACAGCTTGGTGATGCCCTGGACGCGGTTGCGC 358126 32 96.9 35 ............A................... ATGAACGCTACGGCCTGGGCTTCCACCTTGGCCGC 358059 32 100.0 34 ................................ ATCGTCGAATTTGTGCCGCGCGCTAAAACCGGTG 357993 32 100.0 34 ................................ TGCGTGTACAACATGCAGGACGTAGAAGCGGAGA 357927 32 100.0 34 ................................ GCCGCGGCGGCACCGATCACCGCCATCTGGTCGA 357861 32 100.0 35 ................................ AACCAGGCTTCCAGATACTGCGCGCCCAAAATGCC 357794 32 100.0 33 ................................ CCATCAAGGGCTTTTACTGCTTCAATAGAGGGA 357729 32 93.8 33 .........C.......T.............. ATCTGCATGCATAGACCGAGCAATAGTTTTGAG 357664 32 84.4 34 ....T..G.C.T.......A............ AGTTGGAGGGAGGGAGCAGTCGCGCCTAGCTGTG 357598 31 87.5 0 ..........T-.T...........C...... | ========== ====== ====== ====== ================================ ====================================================== ================== 27 32 98.6 35 GTCGCGCCCAACGCGGGCGCGTGGATTGAAAC # Left flank : AAATAGGAGGACCGGAAAATGATGGTGCTGGTCAGTTACGACGTCCGCACCCAGGATAAGGAGGGTGCCGTTCGCTTGCGCAAGGTGGCGAGGGCATGCCGCAATTTTGGCCAGCGCGCCCAGTACTCGGTGTTCGAAATCGAAGTGGAGCCGGCGCAATGGGTATTGCTGCGTGACAAGCTGTGCGCGTTGATCGACCCCAAGCAGGACAGCCTGCGCTTCTACTATCTAGGCGGCAACTGGAAGCAGAAAGTCGAGCACGTCGGCGCCAAGCCCGTGTTGGACCTGCAAGGTCCGCTGGTTTTTTAAGCGCGGATGCCTGGCGCGAACCGGAAGTGGCAGCCGAATCCCTAGCAGGTTCGCGTGGGCGGGGGAGGCCCCGCGCCGCCTGCATCATTCTCCTTGAGCCCGGTGGGTAGGGCTTGGAAATCTGCCTCGCTGATCAGGTTCGCGTTTTTCGGTTGAAAATACCATTGGAAACAAATGGTTTGTAGTACCCA # Right flank : AACATGGCGGCGTTGATTAGCATGCGGATCTGGGCCTATCACGATGTGGATTAGCTGATGACCTGCATCCATGCTGGCCGAGAGCGTGACGGTGTTTTGCTGACTGAAATGGGGACTTATACAAGTGCTGTGATGGTGTTTCCATAGACTATTTTCAGAGCCGCTATTGGGGGCGCATTGTTTTTAACCTGTACTTTGGTGTAGGTTATTCAGCTTTCCGGCTAGGTTGCCTTGTAGGTGGTCTGGTATTTTCATAACATTCTTAATCTTCTTTTTAGTTCAATGACATACCCTCGCTGGAGGGTATTTATATTTGGATTCCTGATGGATCTGAACGCATTGCTAGCCAGTTTTGCCTCCGCTTTTAGTCAAGAACAACGGTTGATCTCGCTGGAGTTTGGCGGTGGTCATATCGCATCTGAACAACTGCTGCCGCTGAGCCTGGATGGTGAAGAAGGCATCTCTCGATCTTACCGTTATACGCTGACTTGCCTGTCACC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCAACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.10,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //