Array 1 94184-91846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNGL010000001.1 Ruminococcus bicirculans strain 1001275B_160808_C4 NODE_1_length_252702_cov_59.5654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 94183 32 100.0 36 ................................ TAAAATTATGCAAATTGACTAATTGTCATTAATTAG 94115 32 100.0 34 ................................ AATATCCACTTTTAATTGTTTAAATGTTTTACGT 94049 32 100.0 35 ................................ AACCGACTTTATAATACTTGATTTTATTAATTAGT 93982 32 100.0 32 ................................ ATATAACCGCCCCATATACTTAAAATGACCGC 93918 32 100.0 33 ................................ TTATCAATGCTTTGTTGTTTCTCGTTCTTTGAA 93853 32 100.0 34 ................................ GGTTTCTGCGGTCAGTGGAATTTGGAGCGTTGTT 93787 32 100.0 33 ................................ GTGTTTTAGGTAGTAGCCGATTAAATTCAGCAA 93722 32 100.0 34 ................................ TCGCCCTTTCGTGAAATTGCCCACTATTTCGTCC 93656 32 100.0 33 ................................ ACTTATAGAATTTTGTGAAATCGAAACACCAAG 93591 32 100.0 34 ................................ CCTGCCACCTGATGTTGATACATATGACAGCCCT 93525 32 100.0 33 ................................ ACTTATAGAATTTTGTGAAATCGAAACACCAAG 93460 32 100.0 35 ................................ CTAAAACGTCACTGTAATATTCAACACAGCCGCCG 93393 32 100.0 33 ................................ TTCACACCAACACTCAGCCGTTATCGCTAAGTA 93328 32 100.0 34 ................................ GCAAGAGATTTCAACTATCCACTGGAATTTGACG 93262 32 100.0 34 ................................ TGTCAGCTATCTTCACCTTGCCGATCACTGTGAT 93196 32 100.0 34 ................................ GCAAGGGCACCGCACAGCCACGCAAAGGCCTGGC 93130 32 100.0 34 ................................ TTCAATATGCCCCCACTTTTGTTCTCGGCTATCC 93064 32 100.0 34 ................................ TGTCAGAAATGCGCAAGCAAGAAGAATCGAAAGG 92998 32 100.0 35 ................................ TGATACTGTTCATAGCATGTGTCATAGATCAGCAC 92931 32 100.0 33 ................................ CTACCCTCATCAATAGCCTTGTAAAAGGCGTCA 92866 32 100.0 36 ................................ GTCGTCTACATACATCTTCATGAATGTTTCCAACAG 92798 32 100.0 34 ................................ TTTCCGTATAAATGACTAATTTAATATTATCGTT 92732 32 100.0 34 ................................ TTGTAATGTCAAGTAATCTACAATTTTGCCGTTG 92666 32 100.0 34 ................................ TTATAAATACTATTTCAGCCTCACACCACAACAG 92600 32 100.0 33 ................................ ATTCTAACGCAGGAGATTTAGTGGTTGACTTTT 92535 32 100.0 33 ................................ AAATAATAAATACGAATACGTTGGTGTCAATAT 92470 32 100.0 33 ................................ CCACAAAATACCGAAAGCGGCTGGCTGAGGTGG 92405 32 100.0 34 ................................ GGAGACCCCACCGGCGATTATTTGTGTCGTTTTT 92339 32 100.0 34 ................................ GCGTGTGGGCATCGGAGATTGAAGAATTCCCAAT 92273 32 100.0 35 ................................ AAAAGCAGAGCGTGAAAAGCTTCTCAAAAGAATTG 92206 32 100.0 33 ................................ TTTTCGGATAGGGGGTGCAGGGGGTCTCCCCCT 92141 32 100.0 35 ................................ GCTTGGCGGGGGGTACGACGCGCCGCGCCCCCCGC 92074 32 100.0 33 ................................ ATGTGGAATTTGAAAAGAAAAGCCGTGAAGAAC 92009 32 100.0 34 ................................ TTTGCACCACGTCGAACTGACCGACGGCGGCAAG 91943 32 100.0 35 ................................ ATTATGCTGACGTTATGTTTTTGTAGTTTATCCCA 91876 31 81.2 0 .C..........A..........G..C-..T. | ========== ====== ====== ====== ================================ ==================================== ================== 36 32 99.5 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTAGTAAGCTATGATGTATCAACAACAGATAATAAGGGCAAAACAAGGCTGAGAAAAGTGTCGAAAGAGTGTCAAAATTATGGACAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTAGACTATGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCCAAAGCATGATAGTCTTCGGATATATTATTTAGGCAACAATTGGAAGCATAGAATAGAACACTACGGCACCAAAGAGACCTATGACCCCGAAGGCGTCCTAATATTTTGACCAGCGTACCCCAAGTGATCCACAAATCCCTAGTAAGTTCGCATGAAAATGCCATGCTATTTGTGAATGCACAGTGAACAAAATCAAATTGATACCCATTAAATAAAAAAAGAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGT # Right flank : TTCGTTTCAACGCAGGACTTATCGATATTGAATAATACAAATAACCGCTTGACTAAGGTCGGGCGGTATTTTTATACCCAAATACTATACATTTTTCATGTGTTTCCCGTCAATCTCCCCAATTCATACACCCGAAATTTGTGCAAACAAATGATTTATAATTTAATTTGGCAACATTTCTGCAATTGTTGCATTTTTTCTGCAACAAAATATCCACTTTTCGTGTATAAGTAGAAGAGGTTTCACCACAAATCGGAAACCTTGCGGAGCGACAGTGTATGAGGAAACATTTTGTCAACGTGAGTTAGGTGAACACGATGAGAGGTTCTGATCGCACAGAAAAGCACTTCCTGCACTCCGTCTGAAGCTTGAAAATTGAATATTTATACCGACACACCTTAGCTATAACCCATGAGCATACTGCTAAATTTAATTGTTATAACCGCCTTTGTTGACATTATTCATATAAAATGGTATACTTAAAATAAAATTTATACATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 17339-19026 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNGL010000014.1 Ruminococcus bicirculans strain 1001275B_160808_C4 NODE_14_length_103735_cov_54.1571, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 17339 36 100.0 30 .................................... GGCTTAATCTTGTATTCAACCACATAACAG 17405 36 100.0 30 .................................... CTCTGTAATCTCTTTAAGGACAGTATAACA 17471 36 100.0 30 .................................... CCAACTTTATAAAGCTGCTTTTCGTTTCCG 17537 36 100.0 30 .................................... AGCAGACGATAGTCATTGAATTGTACACTA 17603 36 100.0 30 .................................... CTGACCCGCTGCGGGTACAGGTTTTGTGAG 17669 36 100.0 30 .................................... TTCAAGTCCTGGGCTTCGCACGCAAGCAAA 17735 36 100.0 30 .................................... TCCGTTGACGTTTTATATATAACACACGCT 17801 36 100.0 30 .................................... CGTATTTATTCCTATATGAACAAAGATCCA 17867 36 100.0 30 .................................... TCTTAATGTGCTGTCAATCCCTTTAAAACA 17933 36 100.0 31 .................................... TGAGTGGCGGTCGCCAAAGTTTTGAACGCAG 18000 36 100.0 30 .................................... TGCCCTGCTCTGACTCTACGGACACGATAA 18066 36 100.0 30 .................................... CCTAAATGCTATTACTGTATTTGCACTGTA 18132 36 100.0 30 .................................... CCATTGCCTTCGGTGTTAATATATCCTCAG 18198 36 100.0 30 .................................... AGATTATAAAAAGTTGTGCCGTCAGTATCC 18264 36 100.0 30 .................................... TGTATCAATGCAATCAATAACAATTGGGTT 18330 36 100.0 30 .................................... CTCGAACAATTTAATCTTTTCAACTTCACC 18396 36 100.0 30 .................................... TCCCCAAGAAGCAGGAACACCCCAACAAAT 18462 36 100.0 31 .................................... TGTGCCACTCGCTCGCCTCTGCTGTCTTGAT 18529 36 100.0 30 .................................... TATCATTTGGGGCAGACAGCAATACTTGCG 18595 36 100.0 30 .................................... GAGATCGACGGACTTATCTTCGTCGAGGAA 18661 36 100.0 30 .................................... AATCCTGATGATCCTATTATGAAGACGTGG 18727 36 100.0 30 .................................... TGAAAACGGCTGTACAAGATGTAGTGAATG 18793 36 100.0 30 .................................... AAGCGGTTGAACATTCCAGCCAGAACGTTG 18859 36 100.0 30 .................................... TGAAAAATTCTCAAACGTGGCAAGCTATGA 18925 36 100.0 30 .................................... TAAAGAGGGCGGTCTTGAAGGGCTGAACGA 18991 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 100.0 30 GTTTGAGAGTAGTGTAATTTTATGGGGTAGTAAAAC # Left flank : AAAAATGTATCGGTAAATGAACGTTTCTATCAGCATACTCAAAAGCTTATGGCTGATATAGCTTTGTATATTTACATGATAACTGAGTCAGCTGATAATGAAATAGAAATTGATGTTCCACAGGACATAAGCGGTATACTTAAAGCTTTTGGTGTACGTTTTTATGATAAAAAAATGGAACTTTCAGAAAAGATCATAGAATATATGACTGCTGTAAACAAATTTAAAGGAGAGCGTGTATTTTTCTTTGTTAATCTTCGAAGTTATCTGACGGACCGGCAAACTGAGCTTTTATACAAAGACATGCTGCTAAGAAAATTTAAAGTGATCTGTATTGAAAATAATGAACACATGCACCTTGAATATTCAAAAACTTTGATAATAGACAAGGATATGTGCGTTATCTGAATTTTGTTGACTTTTTATATTTGTATGCTATAATATAATTACTGCCTAATATAAAATGCACTGATGAGTAGTGTCATTATCTTAAATTTGAG # Right flank : CTTTTATAGGGTAGTAAAACTTCCAAGACAGGATATTGTTCTTACACCAAAAACTGAAAATAGATTATTTTTTTGTGGATGAAAGATATGAGCAGTGATTTCCGTTGTATGAGAATGAATCGTTCTACATTGGAAAATCGATAGCCGGATTGAAATTGAATCAGTCGGCACAGAATCCGATTACATATCTGTATCCACTGGAGAAAGATAAAATTCATATTTAATGAAACTGGCAAATCGGAATTTGAGAAGGTAAGTGAATGGGATACCACGATACAAGATACCATGGAGGAATATGATAATGTCGAAAGATGAGTATTTGATAACCGATACGCCCTTCAAAGCGTTGACGGTTTTTGCAATGCCAATGATTATTGGAAGTTTCTTTCAGCAAATATACAATATGGCCGACTCTGTTATTGTCGGCCAGTTTGTTGGTTCTTCCGCACTTGCAGCTGTCGGTGCATGTGCAGCATTGACCAATGTGTTCATTTGTGTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATTTTATGGGGTAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //