Array 1 55-219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENHM010000044.1 Azospirillum sp. YIM B02556 GCM70020048_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 55 32 84.4 35 AG.C.TG......................... ATTGACGAAAGCCTGTTACTGGACGACCTGTCCGC 122 32 100.0 34 ................................ ATCACCCTGACGGTGATCAGCCGGGACAAGTACG 188 32 93.8 0 .........G..............C....... | ========== ====== ====== ====== ================================ =================================== ================== 3 32 92.7 35 GTCGCCTCCTACGCGGAGGCGTGGATTGAAAC # Left flank : CACCGATTACCTCGACGCCATTCTCGCCGTTAAAATCCGTTAACCCGGATTCGGA # Right flank : CGAGCGCGTATCTGCCAGACAGTGGCGACGACCCCACCGAACCACCATGCAGCCGCACCATAATCAGTATCGCATCATGGATCGTGCACGATCCATGATGCATGATTGACCAGAGACTGGACAATTGCTAGGCTTCCCGGAGCGAGCTGGGAGCATCATGTCGAAGAAGCCTGTCATTTCCCGCGTCGCCCTTGCCGATCAGGTCATGCACCTGCTGCAGGAGCGCATTCTGGACGGCGAGTACGAGCCGGGCGGGCGCTTGAACATCGACGCGATCTCGCGCGAGCTTGACATCAGCTCGTCGCCCATTCGCGAGGCCTTGACGCGGCTATCGGCGATGGGGCTGGTGACGTCCTCGACCTTCGCGGGCTTCGCGGTCACTCCCGTCCCGACCCGCAAGTGGTTCGAACAGCTGCTGACCTTCCGCGTCCTTGCCGAGGGATGGGCCGTCAGGCAGGTCGCGCGGCTCCGGCCGGCCGGTGCGATCGAGCGGATGACCG # Questionable array : NO Score: 6.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.64, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTACGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTACGCGGGGGCGTGGATCGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 43995-48093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENHM010000044.1 Azospirillum sp. YIM B02556 GCM70020048_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 43995 32 100.0 34 ................................ GCCCCCAAGACGCTGATTACGACACTGGAGATTT 44061 32 100.0 34 ................................ GCTGTTCCCGCCGGCCTCTTCGACGACGCCGTCA 44127 32 100.0 35 ................................ TGGCGTCCACCCGCGGCCTTTCCGCCGCCAGGGGG 44194 32 100.0 36 ................................ GTTGCAGCGATCCGACCGCGCCCGCGTGGTCTGGAG 44262 32 100.0 36 ................................ GCTGCCGTCGTCGTGGTAGATGATCGCGGTGCTGGC 44330 32 100.0 34 ................................ CGGCCAGGTCGGTCTGCTTTCCGGCGCACCACCT 44396 32 100.0 35 ................................ GACGTCGCGATGGTGATGATCGTCATGGTCGCCAA 44463 32 100.0 35 ................................ CAGCGGCCAGACGGCGACCCAGCGCTTTCGGCAGT 44530 32 100.0 36 ................................ CTCCGCTCTCTCCTTCCGGCGGAGGCCTAACCAATG 44598 32 100.0 36 ................................ AAGGCGAAGTTTGAGCCAGAGTTGGACGCGATGGGC 44666 32 100.0 36 ................................ GGCCGCGATCTCAGTGGATATCGATGACGGTGGGCG 44734 32 100.0 33 ................................ CCGGCATGTCGGGAAATCCGGCGAGGGCGTCAA 44799 32 100.0 35 ................................ AGCAAGGACGTTGCTCTCGGCGCCAGCATCGACGC 44866 32 100.0 34 ................................ TCCCGCATCCCCTTGAGGACGGAGCCGAACATTG 44932 32 100.0 34 ................................ TGGGCCATGCCGTTGACCGTCGCCGTCTGGTGGC 44998 32 100.0 35 ................................ CTCGCTGAACGCGGCGTGAAGCCGCACCACAAGAC 45065 32 100.0 34 ................................ ATCGGCAGGCCATGCTCGCACAGGGCGCGCGTTG 45131 32 100.0 35 ................................ TATTCCAGGGGCGGTATCAGGGTCGACCCGCTGCG 45198 32 100.0 34 ................................ CACTACTGGTACTGCCGAGCACTTGGCGACCAGA 45264 32 100.0 33 ................................ TCTGCATCGGCATTGGCCTGTCGCTGGTGACTG 45329 32 100.0 35 ................................ ACCAACACCCTGTCCGACCTCCGCGACTGCTACGA 45396 32 100.0 35 ................................ GTTTTGAAAGGCTTCCGCGTCGCCCGGCAGGACGT 45463 32 100.0 35 ................................ GCCGCCTCGAAGCTGTGGGCGATCCGCATGCTGTC 45530 32 100.0 33 ................................ CCCTCTCGTCGGCGACTTCCGCATTCGCGCTGG 45595 32 100.0 35 ................................ TGTCGTTCTCTGCGGGAGCCACGTTTGCAGGCTCC 45662 32 100.0 34 ................................ GGGTTCGGTGCCCTGCCGGATTTTGTCGCATGGG 45728 32 100.0 35 ................................ GGGATCAAGGGGCCGGGCATTGCCGCGTTGCGCGG 45795 32 100.0 35 ................................ CTCCCAACCTGCCCCGGCGCGGCTGAGACGCGGCC 45862 32 100.0 36 ................................ CATGGCTAACCTATAAAATATATTATAGGTGCGCTC 45930 32 100.0 35 ................................ GGGTCGAGGATCGGGGAGGTCACGCGGATGGTGGG 45997 32 100.0 36 ................................ ACCTCATCGATCCGATCAAAGACTGCGGTACGCACC 46065 32 100.0 34 ................................ ACCAGCTTGGCCTGCCGTAGGCCGCCCGGCGCCA 46131 32 100.0 35 ................................ AGGTTCATGCCGCTGGAGGTCGCCCGCCTGCTCGA 46198 32 100.0 34 ................................ GGTGCGGCAGGATCGACGCCGCCATGATCTGGTC 46264 32 100.0 35 ................................ GCTGACATGTAGGTCACGAACCAGCCGTCGGCCTT 46331 32 100.0 35 ................................ GCGCTGAACGCCGCGCAGCGCCATCTGCATGAACG 46398 32 100.0 35 ................................ CATCGAGGCGCAGCTGGCCGCGACCAAGGCGACCG 46465 32 100.0 36 ................................ GGCTACCATGGCCAGCGAGGCCTTGAGGACTGGCGG 46533 32 100.0 34 ................................ TCCTGTGCGGCGGGACTTGCCCTCTGGCGCCTAT 46599 32 100.0 34 ................................ TTCGCCATGTCCTCACCGCGCCCGCTTGGCGCGC 46665 32 100.0 33 ................................ AAGCGCCGCCTGCGCTCCCCCTCCCCTCCCCCA 46730 32 100.0 36 ................................ TGGACGATGGCAGCGGCGCTTATGCCCTGCTGACGC 46798 32 100.0 34 ................................ TCCTGGGTCCAGCGCGTCTCATGCGCGCCGACGA 46864 32 100.0 35 ................................ AGCAGGAACCGAGCGGGCGAAAAAGTTGTCCGGCA 46931 32 100.0 34 ................................ TTTCGGATCGGCACCGCCGCCCTGATCTGGTCCG 46997 32 100.0 34 ................................ CTTGTAGGACATCGCGAGGCCGCGGAAGGCGTCG 47063 32 100.0 35 ................................ TGGACGATGGCAGCGGCGCTTATGCCCTGCTGACG 47130 32 100.0 35 ................................ TGGACGATGGCAGCGGCGCTTATGCCCTGCTGACG 47197 32 100.0 34 ................................ ACCAGCACCCGAGCCATCTCGCGCCGCTTGTCCG 47263 32 100.0 34 ................................ AGCTGCACGACCTGCGGACGGCCGATGCCAGTCC 47329 32 100.0 36 ................................ TTGCGCTGGTAGGGACGGAGGATCATGCCGCACCCC 47397 32 100.0 36 ................................ CTGCTCGATCAGCGCGACGCGGGTGTCGAGCCGCTG 47465 32 100.0 33 ................................ GCGGTCAACGGCGACGGCACCATGGCCGTCATG 47530 32 100.0 35 ................................ GCCGGCATGGATGTCCAAGCCCGGTTCGGCACCTC 47597 32 100.0 34 ................................ ACCTGCCACGATGACGGTACGTGCGATATCAATG 47663 32 100.0 34 ................................ TGCAGGATGCTGAATGTCGCCAGAACCGACGAAA 47729 32 100.0 35 ................................ CGTGGGGCGAGCGGCGCAATCTATGAAATCCGAGA 47796 32 96.9 36 .....T.......................... AGCCAGCCCACCGCCTCCATGACATGCTGGCGGGTC 47864 32 96.9 34 .....T.......................... GATGGCGTGATCGTCGTTGTCGGACTGAGCGAGG 47930 32 93.8 34 .....T..................G....... CTGACCAAGTATTATGGTGAGGGCGGGCAGGATC 47996 32 90.6 34 .....T.....TA................... TTGCCTACAATGAAATGGTCGGACCCAAGAGCTA 48062 32 90.6 0 ......T...A.....A............... | ========== ====== ====== ====== ================================ ==================================== ================== 62 32 99.5 35 GTCGCCCCCTTCGCGGGGGCGTGGATTGAAAC # Left flank : CGACGGCTACCCGCCGTTCCTCTGGAAGTGACCGGCCATGCTGATGCTGATCACCTATGACGTGAACACCCAGGACGCCGCCGGCCGCCGCCGCTTGCGCCGGGTCGCCAAGGCCTGTCGGGATTTCGGCCAGCGCGTGCAGTTTTCCGTATTCGAATGCGAGGTCGATCCGGCACAATGGACCGCGCTGCGCGCCCGGCTGATCGGCGAGATCGACCCCGGCACCGACAGCCTGCGCTTCTACCATCTCGGCGCCAATGCGAGCCGCCGCATCGAGCATGTCGGCGCCAAACCCACCCTGGACCTCGACGGCACGCTGGTGTTCTGAGCCTGCGCGAACCCCAAGCGGACATGAAAGTCCCGGGAGGTTCGCAGCGCAATGCTTTCAATGGGTTGGCTTCGGTGGCATCGTGATCGACGCCCGGCCGGGCAGGGCGCGTGGGGTGGTTCGCGCTCGATCCGGGATTGTGGGTTCCTGAACAAGTGGATATTGATTGGCA # Right flank : CCGGGAAAGTCCGGAAGACGGCAGTGCTCCGCGGCGAAGTCGAGGAAGGCGCGGACGCGGGCGGGCAGGGGGCCGGTGCCGCCGAGATAGACGGCGTGGATGTCCTCGCCGCCGCCGGGGTTCCTGTCCTCCAGCACCGGCGCCAGCGTTCCGGCGGCGAGGTCGGCCTCCACTTGGAAGCGGGCCAGACGCGCCAGCCCGATGCCGCCCAGGGCGAGCAGGCGCGCCGCTTCGCCGTCGCTCGCCCGGGCAACGGCGGGCGGCGCATGCTCCACGATCCCGCCGTCCGTCCGGAAGGGCCAGCCGGCGATGGCGCGCGGAAAGGTCCAGCCGATGCCGGCATGGCGGGCGAGGTCGGCGGGATGTGCCGGCGTCCCCTGCCTGTCCAGATAGGCCGGGGCGGCGACCACCACCATGCGGGCGCTTCCCAGCTTGCGGGCCATCAGGCCGGAATCGCGCAGCGGTCCGGTCCGGATCGCCACGTCGGCGCGTTCCTCCAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2914-114 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENHM010000081.1 Azospirillum sp. YIM B02556 GCM70020048_81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================================================= ================== 2913 32 100.0 35 ................................ ACCATCAACAACAACCTGCGAGCGGTCGACGCCAT 2846 32 100.0 35 ................................ GACAGCGCATGGGCGATGTCGGTGATGAGGATGTG 2779 32 100.0 35 ................................ ATGTCCCCTCGGTACCGGTCGATGTTCGATCGGAC 2712 32 100.0 35 ................................ CGCACTGGTAGACGACGCACAGGGACGGCGTGCCG 2645 32 100.0 36 ................................ ACCGGCCACCAGAACGAGACCATGCTGCGCGCGGCC 2577 32 100.0 35 ................................ TTCGCGAGTAGCGCTTTCGCCGCATAGGCGGTTGC 2510 32 100.0 38 ................................ GACCCGGCCGGCCGCGACAACCGTTCCCTGCGCCGGGC 2440 32 100.0 34 ................................ GACCTGACCGAGCCGTGCCCGGCATGCCCGTTCC 2374 32 100.0 34 ................................ GACGTTGGGCGGCTCCCAGACCTATGGCACCAGC 2308 32 100.0 34 ................................ CATCCGGGCGAGCGCCAGCTCCAGCGCGGGGATT 2242 32 100.0 35 ................................ CGTTGCGCTTGCACCAGCCGGCGACCGCGTCGCGG 2175 32 100.0 34 ................................ CACCGTCGCCGCTTCGACCTCCGGCCGTCCGATG 2109 32 100.0 34 ................................ GGGCCCGGTGATCCCCATCCCGGCAAGGTCATCC 2043 32 100.0 37 ................................ AACCGCGTTATCCGGCCCGATGATCGGGGCGCCGCTG 1974 32 100.0 35 ................................ TGTCGCTGTCGCGGGCCGCTCTGCCGGGCGAGGCC 1907 32 100.0 34 ................................ GACACGCGCGGCGTGGTGACGTGGATGACCGCGG 1841 32 100.0 34 ................................ ACCAGCTCGTGTAGCGCCTTGTCGGCGCCCTCCG 1775 32 100.0 33 ................................ GCGTTACGGGGCGCCTGTAACGCAGTATCGGCT 1710 32 100.0 35 ................................ GCGATCCTCAAGCTCGGCAAGGACATCGAGAACTG 1643 32 100.0 34 ................................ TCCATCTGGGCGCGCAGGAAGGCGCCGCGCGGGT 1577 32 100.0 34 ................................ GCCCTATCCTTGCATGCAGCGATATGCACGAAGG 1511 32 96.9 35 ..........A..................... CAACAGTCAGTGCGGTTACTGTGGCAACAGCAGCT 1444 32 96.9 34 ..........A..................... CTTATAGGACATCGCGAGTCCGCGGAAGGCGTCG 1378 32 96.9 36 ..........A..................... TTCTCCATGATCGCTCGGGCTTTGTTCCGGGAGGAA 1310 32 96.9 34 ..........A..................... ACCCTCGCGGGGTGGGAGGGCGCGACCGCGGCCG 1244 32 96.9 34 ..........A..................... CAGGGCGCAGCGGCGTTCGACGGGCGGCAGTCCC 1178 32 96.9 34 ..........A..................... GCGGCCATGTGGGCGAGGATCAGCTTGTGCCGCT 1112 32 96.9 34 ..........A..................... GGGACCCATACGACCGGCAAATCGTTGTTGACGC 1046 32 96.9 34 ..........A..................... GTCGCCCAACGGTCGAGGTCCGCTATCGCGGCGT 980 32 96.9 35 ..........A..................... AACGTGGTTTCGACCGTCTGGACCCGCTTCGCCAC 913 32 96.9 36 ..........A..................... CGCCAGCTCACGGCGGAGGCACCCAAGCTGGAGAAG 845 32 96.9 33 ..........A..................... GCGGGTGCTGGGCGCCGATGCCGGCGCCTCCGC 780 32 96.9 35 ..........A..................... CTCCGGCTTGGCCCTCCGTCCCGTCGTCAGTGAAG 713 32 96.9 35 ..........A..................... GTGAGGACGGTTCGCTGGAGGCCGCCAGCAAGCCG 646 32 96.9 34 ..........A..................... AGGGTCGCAGCTCCGGTGATGCTGAATCCCGCGA 580 32 96.9 71 ..........A..................... CGCATCCGTCATCTTGCGTCTGGTCAGGGCCGAANCCGCATCCGTCATCTTGCGTCTGGTCAGGGCCGAAG 477 32 96.9 34 ..........A..................... AGGGTCGCAGCTCCGGTGATGCTGAATCCCGCGA 411 32 96.9 34 ..........A..................... CACTGAGAAGTCGCAGGTTTTCGTCAAGCTGGTC 345 32 100.0 35 ................................ TTGCCTTCCAGGCCGCCAGCCAGCGTGGGCGGGCG 278 32 96.9 35 ..........A..................... GCGTCCTGAATGTCCATGACGGCGTCGATGTTGTC 211 32 96.9 34 ..........A..................... GCCATTCCCGACCGTCCCAGCGCCGCGCGCGGGC 145 32 96.9 0 ..........A..................... | ========== ====== ====== ====== ================================ ======================================================================= ================== 42 32 98.5 36 GTCGCCTCCTGCGCGGAGGCGTGGATTGAAAC # Left flank : GAGCGCGGCTCGGCGATTTGGCGGCAGGGCCGCGGCAGGATGTCCCCAGGATGTCCTTTGAGGGCTGATCCGACCTGCGCCGGGCTTGCCGGAGGCCTCCATTTCCCAGAAGAATGGGGGCATCGCGGCGAGGCGGATATCATCCGGCCAAGCCGTTGAAGCCCGTGAGAGCACGGTCCGGGTGCTGTTCGGCCGTGGTCGATCCGGCGGGAGGCGCTGCGCTGCGTGCCCGGCCGCCCGATGAAACCGGCCAGGGCGCCGACAGCCTGCGCTTCCGCCATCCCGGCGCCGAACCCGCGCTGGATCTCGGCGGGGTGGGGGTGTTCCGGGCTTGCGCGAACCCCAAGCGGACGTGAAATTCCCGGAAGGTTCGCAGCGCAATGCTTTCAATGGGTTGGCTTCGATGGCATCGTGATCGGCATCTGGCCGGGCAAGATCGCGGGGTGGTTCGCGCTCGATCCGGGATTGTGGGTTCCTGAACAAGTGGATATTGACTGGCA # Right flank : CTTGGCGGTGCCGGCCGCCGCCGGCCTAGGCTTTGTGTCGCTTCCTACGCGGACAGGGCTCCGAAGCCGGGTTAACAGCGGTTTACGAACGTCGAAGTTTCTGATTCGGTGGAG # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTGCGCGGAGGCGTGGATTGAAAC # Alternate repeat : GTCGCCTCCTACGCGGAGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //