Array 1 28731-30345 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIU01000040.1 Salmonella enterica subsp. enterica serovar 4,12:d:- strain BCW_2046 NODE_40_length_47894_cov_1.39684, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28731 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 28792 29 100.0 32 ............................. AGGCGCGGGAGGCGGCAGCGGCGGCGCAGTCC 28853 29 100.0 32 ............................. CAGATGATCATCAAAAATATCTGAACGTCTCA 28914 29 100.0 32 ............................. TGCACATTCCTTCGTCCAGATAACCAGCAGCG 28975 29 100.0 32 ............................. ATACAAAACCGTTCAGTGGGGAAAGATCTAGT 29036 29 100.0 32 ............................. CTGACCTCCTGTTTATCCTGCCCGACGTACAC 29097 29 100.0 32 ............................. GCGGTCAACGCTTGACGGCCAAATCATGGCGG 29158 29 100.0 32 ............................. CCGCCCGCGTTGCGCAGTATCGGGATTGATAT 29219 29 100.0 32 ............................. GCGTTTAACGTACTTTTCCACGCCGTCCGCTA 29280 29 100.0 32 ............................. GGGCAATTCGCGGCGGGCGATGTCGCGCAGCG 29341 29 100.0 32 ............................. TAAGCAAGGAGTGGAGAAATGATTGATTTTAG 29402 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 29463 29 100.0 32 ............................. CCAACGGACAACCAGTGTGCTGGAGTGAGGCG 29524 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 29585 29 100.0 32 ............................. TACGGGCGCAAAATCACTGAACATCTGCGCAG 29646 29 100.0 32 ............................. CTTCAGCCTGCCATTTTCTCGGACCTGTAGCG 29707 29 100.0 32 ............................. TCGGTCAGCTCGCCTTTTCGGGTCCAGGTATC 29768 29 100.0 32 ............................. CGCTGGCGCGCCACTGCATCAGTACACGCAGT 29829 29 100.0 33 ............................. GCGGCGGCATTGTTCCCGCAGATGGATACCGAC 29891 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTACGCCATCTGC 29952 29 100.0 32 ............................. TGGACGCCACCACGCTGTCAGAATACCAGTCA 30013 29 100.0 32 ............................. GAGGGGGGCGATCCGGGGTCGGGTAAAATCTG 30074 29 96.6 32 .........A................... GGTTCGGGCTGGTTTACGGTGAGCTCAATTTC 30135 29 100.0 32 ............................. CCAGCTCATCGATAAAGCGACCAACCCGCCGT 30196 29 100.0 32 ............................. TCCTCGCTTCGCTGCGGGGCCTCCGGCGCGTT 30257 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 30318 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTAATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCTGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47028-47849 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIU01000040.1 Salmonella enterica subsp. enterica serovar 4,12:d:- strain BCW_2046 NODE_40_length_47894_cov_1.39684, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47028 29 100.0 32 ............................. GCTGGTGGGTCACTATCGGCAAAATTGAACAC 47089 29 100.0 32 ............................. GACGAATGATAGTGACATTTATTTTGACGGTC 47150 29 100.0 32 ............................. GCACGCGTGCAGGATGCTCCAGACGGCCCCGA 47211 29 100.0 32 ............................. CGTCAGCGGTTGACATGGCTAGCAGCTTACGC 47272 29 100.0 32 ............................. AAAATGAAAAGCTGGCTAGCGCCGGTGAAATA 47333 29 100.0 32 ............................. CACCCTGTAAAAATAAATTACTGCCCGTTTTG 47394 29 100.0 32 ............................. GGAATTTTAAACAGAAAAAGGTAAATGTATGA 47455 29 100.0 32 ............................. GCGAATGGACAGTGCAATTCGGCGATGAAATT 47516 29 100.0 32 ............................. CCCCGGCGGGTGCCAGGGCTTGGGAGGTTAGC 47577 29 100.0 32 ............................. GCATTAATCAGCTCAATACGGACGTAGTTCAG 47638 29 100.0 32 ............................. CGGCATAATTTCAGGAATAAAAAATATGGCTG 47699 29 100.0 32 ............................. GCAGGGATTACCCGCCAGGGCCTGGAGCATGG 47760 29 100.0 32 ............................. ATCGCTATATTTAGCCCGCAGCTCACTAATAA 47821 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GCATTAATCAGCTCAATACGGACGTAGTTCAGGTGTTCCCCGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48-1358 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIU01000075.1 Salmonella enterica subsp. enterica serovar 4,12:d:- strain BCW_2046 NODE_75_length_11730_cov_1.18996, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48 29 100.0 32 ............................. GTTTTACAACTCAACAGACCATGAAACTGTTC 109 29 100.0 32 ............................. TCGCCGTGAGGCATCCAGATTTAAGCAACTGC 170 29 100.0 32 ............................. CGCATTCATTTTCAGTCTTTATCAATCGCGGG 231 29 100.0 32 ............................. GCTAGCAATGATGCGGATTTGATGGGCGCAGG 292 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 353 29 100.0 32 ............................. CCTCATAATTAGTTAAGTGGTGGCGGTATTGC 414 29 100.0 32 ............................. CCGGATCTGGAGATAACGGGGATGTTGACACA 475 29 100.0 32 ............................. AACTGGATTTGAATTATTTATTTCACTTTCAA 536 29 100.0 32 ............................. CCATTAACGCCGGAAGAGTCTATAGAAAAATT 597 29 100.0 32 ............................. GCAGGCCGAATAAACGGCTTAGCGGGAATACC 658 29 100.0 32 ............................. CCGAACAGCAGGCGATGATTGAAGCGTACGCC 719 29 100.0 32 ............................. TATGGGTATAATTCTCCATTTGTATGCTAATG 780 29 100.0 32 ............................. GCGTTTTTATCGTGGACGGCGCCAGCAGCGGT 841 29 100.0 32 ............................. TGGGGTCGGTGTCGGCTATTGTGGCCGATCCG 902 29 100.0 32 ............................. ATTCCCCAGCCAGTACCCGTGTCAGTGGGCGC 963 29 100.0 32 ............................. TAACTGGTGAGGGTGAATTTGTTTGCATCCGT 1024 29 100.0 32 ............................. TACGCCGGGATGATTTCAACTACGTTGGACTG 1085 29 100.0 32 ............................. CCCGCGTGACGGTCTGGGGTGATCATTGATAA 1146 29 100.0 32 ............................. GGCTTTTCCTGTCAGGAGTACACAGGGTGGGT 1207 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 1268 29 100.0 32 ............................. CACACCCTGGCTGGCCGGGTCGCTAAACTGTC 1329 29 100.0 0 ............................. | A [1356] ========== ====== ====== ====== ============================= ================================ ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGCGGGGATAAACCGATCGCTATATTTAGCCCGCAGCTCACTAATAAG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //