Array 1 10769-15002 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJMR01000145.1 Burkholderia sp. A1 contig_145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10769 28 100.0 32 ............................ ACGCCGACAACACGCCAGCCGTCGCGGGCGTT 10829 28 100.0 32 ............................ TGACTGCGGCGTGTTGATGATCTTGCGCAGGC 10889 28 100.0 32 ............................ AAATCGCAAGTATCGCAATCGCCCACACACGA 10949 28 100.0 32 ............................ GCAACGATCAGCACCACCTACGGCAGCACTAC 11009 28 100.0 32 ............................ GTTCTCGATCGGGTGCTCGGTGATGACCAGGT 11069 28 100.0 32 ............................ ACGATCACGAACGGCATCGCGAAGGACGCGAG 11129 28 100.0 32 ............................ TGGAGCTGCAGTAGCTTGCTGTAGATGGCGTC 11189 28 100.0 32 ............................ ATGAAGATCGACGGTTCGACGGTCGCCGCTCA 11249 28 100.0 32 ............................ TGCAGCGTTCGCGAGTGCTTCCGCGACGTCCG 11309 28 100.0 32 ............................ GGTGACAGGGGACGGCGCCGTCAATCCGTCGT 11369 28 100.0 32 ............................ CTCGCGTTGGCAACGGAGAAGGGTACGTCGGA 11429 28 100.0 32 ............................ GCACCGGGAAGCTCGAGCCGTACGTCGTCGTC 11489 28 100.0 32 ............................ TCATACCAGCCCGCCTGCATGGCGGGTTTTCT 11549 28 100.0 32 ............................ GTGATGCTGATAGGCCGCATGCCGTAGGACGC 11609 28 100.0 32 ............................ TAAGCGCTGACCAGCGTAGCGAATCCACCCAG 11669 28 100.0 32 ............................ TGAAGACGCGTTTCCCCGTGACAGGGGACGGC 11729 28 100.0 32 ............................ ATTCGATGGAGGTCACAGTTCGTCTCCGAGCT 11789 28 100.0 32 ............................ ATCGGCGCACTTGATCCATCCGCGCAGTGCGT 11849 28 100.0 33 ............................ CACCGATGCCAAGCGCACGCTCGAGGCGTCGAT 11910 28 100.0 32 ............................ TGTCGGGGAGCGTCGGCAATGCCAAGCGGTGG 11970 28 100.0 32 ............................ ATCGAGGACGGCGACAAAGCCTTCGGCTAACG 12030 28 100.0 32 ............................ GGTATGGCGTTCGGACAGAGCGCGGCAGAACG 12090 28 100.0 32 ............................ ACCGAACAAGCCCGTAATGCGGCGATTCAGAA 12150 28 100.0 32 ............................ AGAACTGGCGCGCGATGGCCAGCGCTGCGCCC 12210 28 100.0 32 ............................ TGGTCGCGGCCGGCGTTCGTGCTTATGCCGAC 12270 28 100.0 32 ............................ AACGAGATCCATTCAGACGCAGCCGAAGACTG 12330 28 100.0 32 ............................ CTATCGAAGCCGCGAGCGCGGGTGCGCTCAAT 12390 28 100.0 32 ............................ TGCAGCGGACATCGCGCACTGCAAGACCTACC 12450 28 100.0 32 ............................ TATCAGCAGCAGTACCAAAACGCCCTCCAGAA 12510 28 100.0 32 ............................ TCGAGCGCGCGTTCGGCCGCCCGGTCGATGTC 12570 28 100.0 32 ............................ ATGTCAGTACCCCCCGTAAGTAATGTGGAGTG 12630 28 100.0 32 ............................ TGACGGCGAAATCATCCTGCGCCGGAAATCAA 12690 28 100.0 32 ............................ AGGAAGGGGCTCGCGGTTGGTTCCGCAGCCAA 12750 28 100.0 32 ............................ TATCGGATGAACCCGATGCGCGTGTTCGCGAT 12810 28 100.0 32 ............................ AATCATCGGGAAGCCGGAAAGATGGCAGCACC 12870 28 100.0 32 ............................ GATCGAGCATCCCGTTGACTATCCCTGCCTGG 12930 28 100.0 32 ............................ ATCACGAATACGCAGACATCCGCCAATTCTTC 12990 28 100.0 32 ............................ TGATCATCGGAACTGAAGTGGCTGAGAAAGGC 13050 28 100.0 32 ............................ AGCTTCCCCGTCATCTACGATGACGATCACGC 13110 28 100.0 32 ............................ TTTGCGTTGCGCGCGTGAGACTTATCCGGCAT 13170 28 100.0 32 ............................ GTTTGAATGCAGCGCGGACGAACGAGAGCATG 13230 28 100.0 32 ............................ TTCGCCGCGAAATAGTCGCGCAGGCTCATGCC 13290 28 100.0 32 ............................ CGACTGAAGGCGATAACGATGCGGACGCAACG 13350 28 100.0 33 ............................ ATGGGTTCGTCGATCACGCCCACTACTGCGCTT 13411 28 100.0 32 ............................ AGTTCGTGCGCGGCGGTGCCCTCGTCGGCGTA 13471 28 100.0 32 ............................ GTAGCCGCTCGTCCCGATCTGCGTGCCGTAGC 13531 28 100.0 32 ............................ TCGAGGCCGATGCGCCCGTAGCGCCAGGTGAC 13591 28 100.0 32 ............................ AGCGTCGGGCGCGTGAAGGCATTCAGGATCTT 13651 28 100.0 32 ............................ GTCAGCGCGGGTGCGGTGGTGTTGTTCGTCAT 13711 28 100.0 32 ............................ TGCACTTGCGGCATGAAGCTCGGCCACGCTCG 13771 28 100.0 32 ............................ GCGCTGCGGATCCTTGACGTGGGCCGACAGAG 13831 28 100.0 33 ............................ AGGCCGCCGGCCGAGCCTCGCGACGCCCTTGGT 13892 28 100.0 32 ............................ AAGTACGCGAAGGGGCTGCGCCTGTCGGAAAA 13952 28 100.0 32 ............................ ACACAGCATGGTGCGGTATGGTGTGATCTGGT 14012 28 100.0 32 ............................ ATTCCGGCAGCAGCTCCACGGCCGTCGCTGGA 14072 28 100.0 32 ............................ AGCCTTTCAGCGCGGCAGGCAAAGGCGCTGGG 14132 28 100.0 32 ............................ TGCTGGGAAACTCGACTCCGTCTAGACCGAGG 14192 28 96.4 32 .................T.......... GCAGAAGTAGATGAGGTCCATCGCGTCGCGCA 14252 28 100.0 32 ............................ AACAGCCGATGTTTTTCGGGATCGACTATGCG 14312 28 100.0 33 ............................ TACGGCAGCACCACCATCGAGACCACCCTGTGA 14373 28 100.0 32 ............................ GCTGCGCTTCCGGCGAGAGGCACCCTAATTCG 14433 28 100.0 32 ............................ ATTCGCCGTTGGCGTCGACCAGGCGCGCGATC 14493 28 100.0 32 ............................ ACCGACCAGCAGAGCAACGACCGCCGCTTGAC 14553 28 96.4 33 ...T........................ GTTGCCATGGGACGAGTAGTTCCGGAGCCCGAT 14614 28 100.0 32 ............................ AATTGCGGCGTTTTGAAATCCGCGAGACGCAT 14674 28 100.0 32 ............................ CACTTCGAATTCGCACGCGGCCGGCCGTACAC 14734 28 100.0 32 ............................ AGATGGCGTTGCGCCGATTGCCCTTGGCCAGC 14794 28 100.0 32 ............................ TCGACGCCATCGCCGGCCGCGCGCACGATAGG 14854 28 100.0 32 ............................ AGGACGAGAAACGCGTATGACTTCGGCCCGAG 14914 28 100.0 32 ............................ TAGATCCCACGATCGCCTTCCCGTGCTTGGCG 14974 28 85.7 0 ...TA......T.C.............. | T [14998] ========== ====== ====== ====== ============================ ================================= ================== 71 28 99.7 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : ATGGTTTGCATTCGCTGATGGCGCAGTCCTGGCTGCAGGGGATGCGGGATCACGTGGCGATCGCGACGCTGGCGCCCGTGCCGGACGGCGCGATGCATCTGGTCGTGCGACGACGGCAGTTCAAGACCAACGCGGACCGTCTGCGGCGGCGACGGATGCAGCGCAAAGGGGAAACGACCGAGCAGGCTGCCGCGCATATTCCCGATTCCGTCGAGCGTCGGCCTGATCTTCCGTATGTGCGTCTACGCAGCGCGAGCACGGGACAGGTGTTTTGCCTATTTGTCGAGCAGGGGGGCGCGGTGAGCGAGCAGGTGCCTGGGGCGTTCAATGTCTATGGGCTGAGCCAGGGGGCGACGGTGCCCTGGTTTTAACCCTTTTCTTGGGCTGATTTGGTTGGCCTTTGAAATCAATGGGTTAGCGAAAGGGTGGAAATTTGGGTGGTTTGCCCTTTCGCGCGTGTTTGTTGTTTGGAAACAAGGGGTTGGAGGAGGAAGGGGTTA # Right flank : ACTGCGATATGAAAGTCCGGCAGACAGGCGAGTTTTGCCTCCGGCGCGCGTGTTTTAAAATCGTAGCGCCAACGGCATCGTCACCGAAGTCGTTGATATGACGAGGCATCCTCGCAGACTGGCTCGAATACCGAGTCGTCCGCGATTCGCGCATGTTCGCACTCGATCGCGGCACAGGCAGCGCCACAAACCAGACACAAGACAGGACAACAGGCCGATGACATTCAATCGCAAGATGGCGCAGTGGGCAGCTGCCGCATTGGCCGTCACCTGCTTGCAGGTGACCAACGCGAACGCACAGACCTTGAACATACCGCTCGGCACACCCGACGGATTCTCCGCATCATCGATCAAGAACGTGGGCCAGGACCGCTATTGCATCAGCGGCCGCGTGTACGACGACGCGGGGCCGAGCAACACGGCGATGGCCGTGCTGGTGGACGCCCGGCATCGTACCGTGTCGTGGAAGACCTCGATTCCGCATCCGCGCGACTACGCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //