Array 1 97292-92344 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064003.1 Xanthomonas translucens pv. translucens strain XtKm9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 97291 31 100.0 35 ............................... ACAACACCTGGCTGACGTACTCGGGTAACCGCCGG 97225 31 100.0 34 ............................... AACGGCCGGACTCCCATCATCATAGAACAGATAA 97160 31 100.0 35 ............................... GGTGACCAGGTGCGCGGCTTCGCGGAGAAGGCCAA 97094 31 100.0 35 ............................... GCGCAGACGGGCAAGCTGTCGTTCACCGACCTGGC 97028 31 100.0 33 ............................... GTCCCAAGCCTGCTGATTTCCAGACTGGCATTC 96964 31 100.0 34 ............................... CCTGTCTGTCCACAGCCGTGTGCTGTACTCGCTG 96899 31 100.0 34 ............................... TTTGGGAGGCGAGGCGGCGTTTAAGGACTACCTC 96834 31 100.0 35 ............................... CGTGCGTATATGGCGGACCGCCGGGCTACGCAGGC 96768 31 100.0 35 ............................... TTGGGTGTGTCGGTCATGGTTGGACCTCAGGAAGG 96702 31 100.0 35 ............................... TTGGCCGGTGCTTTCTCGTTGGGCGCGCAGATCTT 96636 31 100.0 35 ............................... GACATCGAGGGGCCGGGCGTCTATACCGTTACGGT 96570 31 100.0 35 ............................... GTCTACGGCGACACCGCCCCGGCTGCTGCTAGCGG 96504 31 100.0 34 ............................... TTCAAGTTTCCGCCGTAGCGAGGGGCCGTCTCAT 96439 31 100.0 34 ............................... TCAAGTATCTGCACCCAGGCGAAGGGAGTTCCTG 96374 31 100.0 34 ............................... GACAGTGCCCGCATTTGGTACTTCGACACTTCGC 96309 31 100.0 35 ............................... CCCGCAGGGGCGTACGCTGCTGGCGGCCACGACCA 96243 31 100.0 35 ............................... CAATGATATTGGATAGTACTAGCTACCGAGCATCC 96177 31 100.0 36 ............................... ATATAGTGGGCGATGACCTTGGCGGACGTGTTGACC 96110 31 100.0 35 ............................... CCCACCACACTGCCCAACGACAGTGCAGAGCGTAA 96044 31 100.0 35 ............................... AATCGCTGTTGCCTGTACCGACTGTGCATTTGCTA 95978 31 100.0 34 ............................... CCTGTGTTTACCTGTTAGCTACTGCGGAGGTGTT 95913 31 100.0 36 ............................... CTCGCCAGGCCAGAGGGTGTCTAGCTGCGGGAGCCA 95846 31 100.0 34 ............................... ACTATCTTGCGGTTAATCCCGTGGCCCAGCCACC 95781 31 100.0 35 ............................... CAGTCACTGACAATGTCATCCATCGTGATGAAGTT 95715 31 100.0 35 ............................... CTCACGCCCAGCAACGCGCCCCGTGCCGTTGGCGA 95649 31 100.0 35 ............................... CTCCGTAAGGAATCCCATTTGCGTATTAAGTTCCA 95583 31 100.0 36 ............................... TCCCAGATGCCGCAGCAGACCATACCGCTGTTTGGC 95516 31 100.0 35 ............................... GTCTACGGCGACACTGCCCCGGCTGCTGCTAGCGG 95450 31 100.0 34 ............................... GCGAATCTCGAACTAGGAATGAACCTCCGAAGCG 95385 31 100.0 33 ............................... TAAACAGCATCGCCGGGGCGGCTATGGCGCAGT 95321 31 100.0 33 ............................... GCACAAAGGCCGCCCGCGACGGTGTAACTGACC 95257 31 100.0 34 ............................... CTCATGGAGAGTAAGGCGGCGCTGGATGCCTTGC 95192 31 100.0 35 ............................... TGAATGGTAACGGCACCGGCCAAAACCTGCTGGGT 95126 31 100.0 37 ............................... TAAACAGCATCGCCGGGGCGGCTATGGCGCAGTTCAC 95058 31 100.0 34 ............................... CTCCTCCGTTCCCTTCGGGTTGTATCCTTCCAGG 94993 31 100.0 29 ............................... TCCGTCATCGGAATTCCTCGTTGTGTAGA 94933 31 100.0 35 ............................... AGGCTGTGGCTAAGGCAATCGGCACGCACGTGCAG 94867 31 100.0 35 ............................... TGCCCGTAGAGCCACCGCCACTCGCGTAAGGTGCG 94801 31 100.0 36 ............................... TGGAACAGGCTGAAACACCAAACCCGCATCAGGCTG 94734 31 100.0 33 ............................... TTCCACTTGCCGTGCTCCGGGTGGGTGTCGTCC 94670 31 100.0 34 ............................... CTGGTCACTGTCGTAGTCGCTTCGTCGTACGACC 94605 31 100.0 36 ............................... CGCACGCAAACAGTGCATGTCTAGCCCTAGCCGGAG 94538 31 100.0 36 ............................... TTACGCATCGTTAGTTCCTTCTTGTGCTATGGCGTC 94471 31 100.0 34 ............................... ATACGCAGTGCCGGGTCTAGAAGGATGTCGAATC 94406 31 100.0 34 ............................... ATCCCCGCGGCGCCGGCACCGGCACAGCCCGGGA 94341 31 100.0 35 ............................... TGGAGCTGCTTGCTGGCGATCGTCATCTGCTGGGC 94275 31 100.0 35 ............................... TTGCTGTCCTTGGCGAACCGCTTGGTGCCGTCCTC 94209 31 100.0 34 ............................... TCGATCAGCCGACCATAGCGCGGCGTCTGGATCG 94144 31 100.0 34 ............................... ACCGTAACCGTCAAGACAGCTGCCGGTACCGGTG 94079 31 100.0 35 ............................... CAAGACGCGCTCGCGCGTATCTATTTCCTGACCCG 94013 31 100.0 34 ............................... AGCCACCTTGTCCGGACTCGCCCAGATCGAGTTG 93948 31 100.0 33 ............................... CCGACGTGCGCAACGACGACGCAGTCGATGGTA 93884 31 100.0 36 ............................... GGGTTCGTGCTACCCGGCGTAGCGATCAACTGCCGG 93817 31 100.0 34 ............................... TCAGATTAGGCGCAGGATGCGCGAAACAAAGGTA 93752 31 100.0 35 ............................... AGCGTCAACGTGGCCCACGCGCGCATGCTGCGCGA 93686 31 100.0 34 ............................... TGCAGCAGCTTGAGGAGCGCTTGCAGCGGTTCGC 93621 31 100.0 33 ............................... TCGCGATTGTCACCGGTGGTGGCAAGTCGCTGG 93557 31 100.0 36 ............................... GGGTTGGTCGGAGTGGCGGTTTTGAGGGCCGGCGAG 93490 31 100.0 35 ............................... CTGGCGCAGGTCGCGCACGAGTCGGACAACTTCCG 93424 31 100.0 35 ............................... CACAATGTACTGACAGGACCGGCCGAAACACGTTT 93358 31 100.0 36 ............................... CGGTCGGTGCTGCTGCTGCTGCGATGGGGGGCGCAG 93291 31 100.0 36 ............................... GTCTCACCCGGCAACAACGGCGTCGCTGATCGCATC 93224 31 100.0 33 ............................... TTCGCCCGGGCCAAGAGCGCGGAGGCGGCCCTC 93160 31 100.0 34 ............................... GACAGCAAGCCGCCGTTCTTGCGCATGCGCCTGC 93095 31 100.0 33 ............................... ACCACGGCAAAGCCGGCGAGCCGATGACAACTG 93031 31 100.0 35 ............................... GTAATACCACACAAGTCAGCGCGGCGCCGGCAGAA 92965 31 100.0 34 ............................... TTTTGCACAGGGCGACAGCTTCCGCTTAGACATC 92900 31 100.0 35 ............................... AAGATCAACATCCCCGGTGCCAGCACAGAAGTGCG 92834 31 96.8 35 T.............................. TCTGTCGAAGGCATGCTCACGGCTGCGCTGACTTC 92768 31 100.0 34 ............................... TACAACAAGCTGCTGAATATCGCCGGCATGGGGC 92703 31 100.0 34 ............................... GTACGCCTGCCGGAACCTCGGAAATTCCACGCCG 92638 31 100.0 34 ............................... TGGAACAGCGAGAAGCACCACACTCGCATGAGGC 92573 31 96.8 34 ............G.................. AACCGTAGGTTGACTGGTTGGCCTGCCAAATAAA 92508 31 100.0 35 ............................... TCGACCCAGGAGCCGAACGATGCGCTCGAGAGCCG 92442 31 90.3 33 ...............T....C..G....... ATGTATTTGTTCGAAGAACATGTTCTTGCCGGT 92378 31 93.5 0 ...............C.........C..... | G,G,G,T [92348,92368,92370,92374] ========== ====== ====== ====== =============================== ===================================== ================== 76 31 99.7 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : TGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAAAGGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGAGGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGGCCGTTCACGGTGACCTCGGCCTTGTACTTGCCAGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //