Array 1 15305-14411 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPS01000007.1 Westiellopsis prolifica IICB1 scaffold_59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 15304 36 100.0 36 .................................... TCATTGCATCAAGTTAAAGTTGGCGATCGCGCCACA 15232 36 100.0 36 .................................... ATGCGAGTCTCTACTGAATTTAAGTGTGCAATTACG 15160 36 100.0 35 .................................... GTGCAGATATGGAGATTTTACCCAAACAATTAATT 15089 36 100.0 36 .................................... ATTCTAATGCGATCGCGCCTCTAGTTGAGCGAGTGA 15017 36 100.0 36 .................................... ATAATACTACCTACCAACATCTCAAGTGGTATTCTT 14945 36 100.0 36 .................................... CGAGAAACTTTTGGCATTATTTTCTGCGAATAATTT 14873 36 100.0 36 .................................... GTTCCAGATTGGCGCTTGGATAGGTAGATTGTTAGG 14801 36 100.0 36 .................................... ATCAAACTTGTCTCTAGCTTTGCCAAATCAATTGAC 14729 36 100.0 35 .................................... GTTACTCAAAGAAAAAGAGTTGCACTCTTTTAATT 14658 36 100.0 34 .................................... GTTGGAAGCATCGTAGATCTTCGGAGATCAATTC 14588 36 100.0 35 .................................... TCTTCAAAATCTAAATCAAAATAAGTTGCTAACAA 14517 36 100.0 35 .................................... ACTAACGATGCTGGAAATATTTTTTTCAGCATCTT 14446 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 13 36 100.0 36 GTGTCCAAACCTTTGATGCCGCAAGGCGTTGAGCAC # Left flank : TAAAGCTTACAATCTACTCCAAGGATACGGAGAGCGAATACAGTATTCAATATTTCGTTGTTGCTTGACACAACGCACACGGGAAAAGTTACGTTGGGAACTCGAAAAGGTATTAGCAAAGGAAGATAATTTGCTTTTGATTCGGCTGTCACATCAGTGTGTTGCAGCAATACCGAGTTATAACCGCCCAAATACGTGGTTGTGTCCAGAGGGATCATATCGGATTGTTTGATGCATGGATATGCGGTTGTTAAAGAAAACAATGTCAAAAATCGGCTCAATGTCTTATTGGAAAGTGTTTTATGGTTAAAAGAAGTGTCGAAGGTGCTTGCATTCTGGCAAAACATGCTATCAGCTAGGCAATACAAGCTTTTCATGATTTGGCTGCTTTACTTCGAGTGAAGATTGGGTACAATTTGACTGGTTAAAATCTAATTTGGACGGAGGTGCTTGTAAAATCAGAATCCGATGTTTGTCAGGTAAGGATTTCGAGCATCGCC # Right flank : TTTAAAACAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCAAACCTTTGATGCCGCAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 7786-8372 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPS01000005.1 Westiellopsis prolifica IICB1 scaffold_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 7786 29 100.0 54 ............................. GTTTCCCTTTGGCTACTGTTCTGGTTTGGTTATTTTGATAACCTAAGTCGTAGA 7869 29 100.0 55 ............................. CCTTTTCCCTGCCCTCTGGTGTAGAGAGATTCTGTTTGTTGGTATAAGTCGTAGA 7953 29 100.0 46 ............................. TATGAGGTTGATAAAACTCCTGCGGCAGCGGAAACAGCGTCGTAGG 8028 29 100.0 49 ............................. CCAAGATGGCGGGTGCCATCGGCAAAGCATACTACACAGTAGTCGTAGG 8106 29 100.0 52 ............................. ATTATCTCTCGTGTGAGTGTAAGTACATATAGCCGCCGTTATACGTCGTAGG 8187 29 100.0 48 ............................. GTCTTTTAGGAAGTCTTCTTTACCGAAACAAACGGCGAAGGTCGTAGG 8264 29 100.0 51 ............................. GAGGACAGTAGCGCCCTGTTACTTGTTCTAGAGGGGCGTCCTTGTCGTAGA 8344 29 93.1 0 ........................A..G. | ========== ====== ====== ====== ============================= ======================================================= ================== 8 29 99.1 51 CTACCTTCACCCCTCACGGGGACGGAAAC # Left flank : AAGGGTTTGGGCAGTTTGAAGTTAATCGATTCGCGCTCGATGGGTGTCATGTCTACACTAATGTATGTACCAAGTGTAGAAATTGTACAGCTGGATGGGGTATGTTTTTCCCCAAGAGGTGAGGAGTGAGGATGGGCGATTGGCTTGTTTAATTTTGTAAACATCACAAGTTGAGGTTTAAGGGCTATGTGAATCCTGAAAGTCTCTTCATATCAAGCTTTGGTGGATTGTAACGGAATGTAAAAAAGCCGATGAAAATGACGCAGTGAGGATTCAGGATTATGGATGAGTCAAGCAAAGTAAATAAAAGAAAAGTTAGATTTTTTAGTTTGACTCGTGGCTGTTTTGCTGTAATATTAAAGCTGAAAGTAATTTTTGGCGCTAGATGTTTTTTAACATGTGTACTGTACAACTAGGTTACATCACTGCTTCCGTACACTGGCGCAACTGCACCTTGAAAACTAAATATGGTAAGGGTTTCCACAGGGTAGGGTCGTAGA # Right flank : CCAGAGTAACAGGGCAGAAAAAAGAAGCGATCGCACTGGTGATGTTTTAATCAATAATTGCGCTTATTGCTCCAATGGACGCAAACCCACTTGAATCAACCTTTTAGCAAGCTGAGTATAACGCTGCTGTTTGTTAACAGAACGCACAGCCATACCAATGGCTTTTTGAGAACCAATCACAATTGCTAGCTTTTTAGCACGGGTTAGCCCAGTGTAAAATAAATTACGACTAAGCATCATGTAATGTTGCGTGTACAAGGGCAAAATCACCACCGGGTATTCAGACCCCTGGGACTTGTGGATAGTAACGCTCCAGGCGAGGGCAATTTCATTTAAGTCTGCATAGTCGTAGTTGACTTCCCGTTCTGCGTACTGTACTGTAACTTCTTGTTCTTCAGTATCAATATTGGTAATAAACCCGACATCACCATTAAACACTTCCCGGTTGTAGTCGTTGGTTTGTTGAATCACGCGATCGCCTGTTCTCAAAATTGTTCCAC # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACCTTCACCCCTCACGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 13344-14465 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPS01000005.1 Westiellopsis prolifica IICB1 scaffold_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 13344 37 100.0 34 ..................................... CTTTAGCTTTCAGGATTGCCCTTAAGAGGAAATT 13415 37 100.0 34 ..................................... TATTCCATCATTTGGCACCAATCAAGCGCTGAGC 13486 37 100.0 34 ..................................... AGAGCAGAAAGGACTAAAGCCGTACCCGATAATT 13557 37 100.0 33 ..................................... CTTATAGAATTGCTTCTAGCTAAATCTAAATTT 13627 37 100.0 36 ..................................... TGCTAAGTCTGCATTGAACTCCACTTCAGAAGAATT 13700 37 100.0 34 ..................................... CAACAAACTGCTCTGGGAGCCACTCTGCATTGCT 13771 37 100.0 36 ..................................... TTGGAGAAAGAATTTCGTGACTAGGGTTTTCTTTGA 13844 37 100.0 37 ..................................... CGTTGATGGGTGTAGACAAAAAATCAAATTTGTATAT 13918 37 100.0 35 ..................................... CCGACAAAAACCGACCCTAGAAAAGTGCTAACATT 13990 37 100.0 40 ..................................... CGACTTCGCCTTCTGGATTCAAGTTAATGATGCGCGTCTC 14067 37 100.0 33 ..................................... GATTTTAATATTAATTCCCTAATTTTGACTACG 14137 37 100.0 36 ..................................... TGCGATCGCCACCACCCGACTCTCTCAACTATCAAA 14210 37 100.0 40 ..................................... ATGGCAGTACAAAGCCCAGGAAGGTGACAAGTCCGATAAC 14287 37 100.0 35 ..................................... GATTCTAACCATCGATGTAAGCCATTGCTTTTGTT 14359 37 100.0 33 ..................................... ATGCCCGTCACGTTCCATAATTATTCTCCTTTA 14429 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 16 37 100.0 35 GTTGCAACTAACATTAATCCCTATTAGGGATTGAAAC # Left flank : ATTTGTTTAACGCACCTGATCTTGATATGGAAGATTTGTTTTCTCTATTTGATACTTCTATGCAGAAAATTGCAGCAGAACTGCGACGTATAAACGGTGCAAAACAAGGTTATTACATAGCAAATATTTTAGATAAAAAATACTACTACTGTGGTACCGAGTGGGAGGATGTGAAAGTCAAGTTAAGGGAGTTGGGAATTGGTAGAGATGACCCACTACAATAAGTAGCATCATCTCAAAAAACACAATTTCCGCGAAAGGGTAGGTGTTTTTTTGAACATGTCAAAAATATTGGCTCAAACCATTACTCTGATTGGGTTTGAACCTTGTTGTAGGTGTAAGGAGGTTTGCGGCATCTCTAAAAAGCTTGCTGCGACTAGATTTGAAGGATTTTTTCTCAGCCATCTCTTGACACCCCAACGGCTGAAAAGGTATATTCTCTTTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCCAAAACGAGCA # Right flank : CCTTTTTAACCAGTCGCTCAAGAGGTTAGCTTGTGGTCGCAACGTGTGTTGGATATGTCGGGATTGTTAAATAAGTCAATTTCTGAAGCTTGCTAAAAGTTGCAATATCTCTGCTCTGCCAGAACTTATAACCAAGGACGTACGCCCCAATTTTCACCCGATTTGGGTTTGAGGAAATTCAGCAGTTTCATGACCGAAGAGGAACGTAACTATTAGCAGGGTTCCCATCTTATGGGTGATTAATAAAACCCCACGTCTGAGGTGGGGGGTTTATCTTGTGAATACAAATGTACTATACAGTAACGAAGTTGACAAGCGATTTAGAGGGGCGATCGCTTCCTACCGCAAGGATTTCTGACAATGATTAGACCAAAATCACATAGTTGAGTGTCCGAAATCACAATTAGATATCTGGAGAATTGCCTGTCTAGTTTGAAGATATTTGTAGAAATCAAAAATTGAGGTAACGACAATGACTTTGAATTTAATTGATGCCGTTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTAACATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 617108-616707 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPS01000001.1 Westiellopsis prolifica IICB1 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 617107 37 100.0 36 ..................................... ATAGCGATCGCACCAGATGCGGGAGATGTCACCAAA 617034 37 100.0 35 ..................................... GAAATCCATTGTGGATTCTATTACATACTGCTGAA 616962 37 100.0 33 ..................................... TTCTACGACATTTACCCAGATTTCTAATTTCAT 616892 37 100.0 37 ..................................... GCATCGTCAATCACGTCTATCAATTTAGTGCGCGTTC 616818 37 100.0 37 ..................................... GTGACTCCCGACGGCGATCGCTTCGGAATTATTCATG 616744 36 81.1 0 .......................C-.CT.C.C....G | T,A [616709,616712] ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 96.9 36 GTTGCAACTCACACAAATCCCTATTAGGGATTGAAAC # Left flank : AGATGCTCCCTAATAATCTATCTAATTCCATCTACCAAAAATAGCGTGAATAACAGGATCAGTTCGCTAGCATTTGGCATTTTGGCAGAAAACAAACTTATAGGCTTTTTTTAGCGATATATTAACTATTATCCCAATACACTAATTTTGATAGGTTTGTAGTAGGGGTTTTAGCCCTTATTTAATTGATTGAAAATCAGTGTGGGGGTATAGAGATTTTCCCCTGACCATGAACTCTTTTAGCCTATGATTGCGCCAACCTGTAGGTGTTTGAAACCAAGACTCGAACTTTACGCCTGAAAGCTTTGCCTGTTCTAGATTTGAGCCACTCAAAACAAAAAAGAGGTTCGCGCAATGTCTGAAACTCCTGCTAAGAAAGCTTTTGAAGCGATTTTTTCCGAACCACTGTTGACAGTGCGATCGCTCAAACGCTATATTTACTCCAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCCAAATTGAGCA # Right flank : ACAAATCAATTGACATTTAAATCCTGTAGAGACGCGATATATCGCGTCTCTACAACCCCAAAAATATGACGAAAAATCCTATCCCTTGCAGTATTGACACAAATTGCTATTCAAGTTTTTGAGTCCTGAATCAAGTTTCTGAGTCCTGAATCAAGTTTCTGAGTCCTGAATCAAATTTTTGAGTCCTGAATCAAGTTTTTGAGTCCTGAATCAAGTTTCTTAGTCTTAAATTAGCTTCAGAAGTTATAAAACTGATTTTTAAGGCAAAAATCTAGCCTAAGTCTTGCAAATCTCTTATTATCATCAAATTTCGCTAGAATGCCTTCCAATACTGCTTAGAGAATATAAATCGATTGACATTTAAAATCTATAGAGACGTTGCACTGCAACGTCTCTACATGGCAAAATTCTCCTCTCAAGTCGTATATTCGGCGTTTATCTTCACGTAGTCATAACTTAAATCACAACCCCAAGCTTTACTGGAACCATGACCATTGCCT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTCACACAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 3163200-3161557 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPS01000001.1 Westiellopsis prolifica IICB1 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 3163199 36 100.0 37 .................................... GCCTGGAAGAACGAAATTAAAAAATACGGGCCTTTTC 3163126 36 100.0 37 .................................... TTTCTTAGTTTGTTGCGTTTCATGATCGGAAAATTTC 3163053 36 100.0 33 .................................... GAAGCAGAGCCAAGGGTTAAAAGAAGAATCATA 3162984 36 100.0 42 .................................... CTGTACAGCTCCACCCCAAACATCTTTGGAAACCCGTCTCCA 3162906 36 100.0 37 .................................... GCTAACGTTAATGACGCCAGAGTAATTTTTTTCATTC 3162833 36 100.0 39 .................................... GTTTTGAACTATCTCCGTTGGTAACGGTTGATCTGTTCC 3162758 36 100.0 38 .................................... TCTAACAATCAAGAAAATCAAGACGATTTAGATTCTGG 3162684 36 100.0 32 .................................... GTTAGCTTTGCCAGTTCCGCCGCAGCCAAAAC 3162616 36 100.0 41 .................................... AAAAATATTTGGGCTGCTGGTTTTGTCCAAAGATACTGGAT 3162539 36 100.0 36 .................................... ACATATAACGACCTGTTTTCCGAATCGTTCTTCCAT 3162467 36 100.0 35 .................................... GGTTGCATGGTCTGTGTGGAAGTGGTCATACTAGC 3162396 36 100.0 38 .................................... TGAAAAGATTACACCGCATAGCTGAAAGCTATACTTGA 3162322 36 100.0 41 .................................... ATTTTAGTAAAATGAACTGAACATTGACTTCAGACATTATG 3162245 36 100.0 35 .................................... TTATTGTCTTCAATAGCTTCCTCTTGACTGCTGGA 3162174 36 100.0 39 .................................... AATCCAGGCTCCACCAATGATTAATGAGTTCATTGGCGC 3162099 36 100.0 35 .................................... CAAAGCGGGCTAACCGCTATTAACATGGTTAACCC 3162028 36 100.0 37 .................................... GTCGATGAGTTCTGCAACGAGTTTTACAGTCTGGTTT 3161955 36 100.0 35 .................................... TTTCTGAGCCACAAAACTTAGTACAGTAGACAGTA 3161884 36 100.0 35 .................................... GAAGGGTAGCCTATTGCGTCTAAGATTTCTTCCAA 3161813 36 100.0 36 .................................... GATAATAACGGCGATACTTACGTCACATGCTCTCAC 3161741 36 94.4 37 ............A..................G.... GTCTTGAGAAGCAACGCATACTCGGAACAGACAAATG 3161668 36 94.4 37 ............A..................G.... AGTTGAGTATTCGTAAATCGCCCGAGTCTCGCCCGTA 3161595 36 80.6 0 ......G...G.A..C.........A.....GT... | TG,A [3161560,3161565] ========== ====== ====== ====== ==================================== ========================================== ================== 23 36 98.7 37 CTTTACAATCACGTCGCCCCGAAAGGGGATGTAAAC # Left flank : CCTCTTGTAGGTGTTTGACAAAGAATCGGTTGTGGCATCATATTAATAAGACCTTACTGAATATAGTTGGGTGGGAGAGGCGTTGTCTACTTGGTCGTGGGAACGCCTCTCTTATTTGTATATTAGTACGAATAATTCTTATTTGCAGTACCTTTTTAGATATTATTTCATAATATTGTATATTTACACTAGCGCTGTGTATACTGGATGTGTCGCAGGAGCAGAGACGCGAAATCACCTTGTGGGATCTTGCTACGCATTTCTACTTGACAAATAAAAGCAGCAAGTCATACTCTAATTGAAGTGTGTTGAGTTTCATCGACACACCTCGCCCGAACCTTGAAAACCGCATAACTTCGTTGAGGTGTGTCGATGCCTTATGCAGCAAGGTTTTCAGGCTGCAAAATCGATGATTTTCTGAAATTTTTTTTCCGTTTTTCAGAGGTGTGTCGATTAGGGGGTCTAGAACCCTGTCTGTGTAAGCTTTCTAGATGTGAACT # Right flank : TATCAGTTGCTCATGTCGTAGATTACCTTCACCCCCTCACGGGGATTAAAATTCTTCATCTACGTGGCTTTTTAAAAGTTTACTCAACCAAGAACCGCGATAACTTTAATCATTTATTTGCGATCGCGTAGCGTCTACTTTGCACCATCGCTTTGACGTTTGTGACGAATGTCGTCTCATTCATAAAGAACGTCGCGACGTTAGCCACAAATGTCGTGATGTTCTTTATGAACGGCGCGACGTTACCCACAAACGTCGCGACGTTACCCACAAACGTCACGACGTTACCCACAAACATCGCGACGTTACCCACAAACGTCGCGATGTTACCCACAAACGTCGCGATGTTACCCACAAACGTCGCGATGTTCTTTAGATCTCTGGTGAAAAAGAATGTAGAGACGTGAAATTTCACGTCTCTACAAGGATTTGGGGGAACTTCAGCATAGTGCGATCGCTCCCAATACGGTTCGGATAAGACAAATCGATTGGCATTTAAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCACGTCGCCCCGAAAGGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 3 3255079-3254462 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPS01000001.1 Westiellopsis prolifica IICB1 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 3255078 36 100.0 38 .................................... GGCGTGGAGCTTTAGAGGCTACTAGTGTTAACTATTAT 3255004 36 100.0 36 .................................... TCTTTATCTAAAGATTGCAAATGCCCAGTTTTCATA 3254932 36 100.0 33 .................................... CCCAAATAGATAGCCACTGCTTTTTTCTACAAA 3254863 36 100.0 35 .................................... TATATTTTTAACTTCATTACCTACTTCCATTTTTT 3254792 36 100.0 36 .................................... TTTTACAGTTAGTTGTTGAACATTCTGAATAGGGAG 3254720 36 100.0 38 .................................... TCTTGTTCTTGCCCATTGCCATTGCTAGGGTGAGGAAA 3254646 36 100.0 38 .................................... CCCTACTGTTGGGTCTTGAATGTTTTGTTCTGGAAAAC 3254572 36 100.0 36 .................................... TTAATGTTTACAATGCCACTACCAGCAGTATTGAGG 3254500 36 91.7 0 ......G...G.....................T... | TG,A [3254465,3254470] ========== ====== ====== ====== ==================================== ====================================== ================== 9 36 99.1 36 CTTTACAATCACATCGCCCCGAAAGGGGATGGAAAC # Left flank : TAAACCTCTTGTGGGTGTTTGACAAAGAATCAGTTATGGCATCATATTTAATAAGACCTTACTGAATATAGTTGGGTGGGAGAGGCGTTGTCTACTTGGTCGTGGGAACGCCTCTCTTATTTGTATATTAATACGAATAATTCTTATTTGCAATACCTTTTCAAATATTTTTTCTTATTATCTTATATTGTAAGTATCAAATTGTTTACTCTGTATGTGGCATGAATCAGGAGTGCTTTGACCGAAAAGATAAGCAGTCTCAATAACTTGACAAACAGAGGTGACAGATATACTGTAATTTCAATGTGTTGAAACTCATCGACGCATCTCCCCAGAACCTTGAAAACCGCATAACTTCGTTGAGATGCGTCGATGCCTTATGCAGCAACGTTTCCAGGCTGCAAAATCGATGATTTTTTTGAGTTTTTTTTCCCTAATTAAGAGATGCGTCGATTAGAGGGTCTGGAACCCGGTCTGTGTAAGCGTTCTAGATCTGAACT # Right flank : TATCAGTTGCTCATGTCGTAGATTACCTTCACCCCCTCACGGGGATTAAAATTCTTCATCTACGTGGCTTTATTAAAAGTTTATTCAACCAAGAACCGCGATAAATTTATCATTTATTTGCGATCGCGTAGCGCCTACTTTGCAGAATCGCTTTGACGTTTGTGACGAATGTCGTTTCATTCATAAAGAACGTCGCGACGTTAGCCACAAATGTCGTGATGTTCTTTATGAATGGCGCGACGTTACCCACAAACGTCGCGACGTTACCCACAAACGTCGCGATGTTACCCACAAACGTCGCGATGTTACCCACAAACGTCGCGACGTTACCCACAAACGTCACGACGTTACCCACAAACGTCACGACGTTACCCACAAATGTCGCGATGTTTTTTAGACCTCTGGTGAAAAAGAATGTAGTACTTCGCCACGCAAATTTTGACAGGTTGCGAGGGGTTAGATCCCTGACTTTTTAAAAGATACAGCTGGCGAATCAGGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCACATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 3290867-3292062 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPS01000001.1 Westiellopsis prolifica IICB1 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3290867 37 100.0 41 ..................................... TAGCTAAAGACCAACCTTGCCACGGGGATATTTTAGCTGAT 3290945 37 100.0 35 ..................................... ATCAACCACTACTTTGCCGACGTTGGATTGATAGA 3291017 37 100.0 34 ..................................... TTATCCAATAAGCGTCAATGTCTGGATTGTCCGC 3291088 37 100.0 38 ..................................... AACACCTAAAATAAAAATCCTCTGAAATCAGAGGATAG 3291163 37 100.0 34 ..................................... AAATATTTTGCAACTATTGTATGAGTTGCACAAT 3291234 37 100.0 36 ..................................... TTGGCAGGGTGAGGTAGACCCGATAACCCCAGAAAC 3291307 37 100.0 35 ..................................... GGAGATTGAACAACCGAATTTTGTTTGGCATTTAA 3291379 37 100.0 33 ..................................... TTTATTGGTTTCTCGCTAGAAATTCTTTCTAGA 3291449 37 100.0 34 ..................................... TTTGCTGAACTGTCCTAACCGTTTCCAATTTTGG 3291520 37 100.0 37 ..................................... AGAATCGATCCTTTTACCAATCAACTTATACCTCCAG 3291594 37 100.0 34 ..................................... CCACATGTAAAAGAAGTTGAGCAAACAGGCAAGT 3291665 37 100.0 35 ..................................... ACTAAATCTTTGGGTGCGGCTAGCGTACGCGTAAA 3291737 37 100.0 35 ..................................... CTTTATTAATCTTGGTGAGAGTATTTACATTTGGC 3291809 37 100.0 35 ..................................... TGCTGCTGAATAGTCCTGACACGGCGGAGACAATG 3291881 37 100.0 36 ..................................... TCAGCAACTCATATATAAGATAGAAAATTGGCAAAA 3291954 37 100.0 35 ..................................... TATTTTTTCTCACTGGAAATGAGTAAAAAGCAGAT 3292026 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 100.0 36 GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Left flank : GAAAATTTGCGGTTTGATGATAGTCTCTATCGCTTCTGGGGTGAAAATTTACTCGATTTCACCAATTTTCAAGAATTTATTCCCGAAGTCGGAACCTATGAAGGTCGGCAACTCGGAGGTAGTATGGTTCCTGGGATGTTGGTGGAAGACTTTACGTATACTTTGTAACAGAAGAAGAACAGCAAATTGAAATTTTCAAGCAAAATTATCCATCAAAATTACAACAAAAGCTAAGGTTGTTGAAGAGTGATGGTGCAAACCTGTAGGTGTTTGACACGAAAACTCAAATTTTATGCCTGAAAGACTTACCTGTTCTGGGTTTGAGCCATTCACATCGATAATGAGGTTTGCACCATGTCTAAAACTCTTACCAGTAAAGCATTTGAGCCGATTTTTTTGGAACCACTCTTGACAGTGCGATCGCTCAAACGCTATATTTACTCCAGGTCTGCACCACTGTACCTTGAAAACCATATACAGCAAAGCTTCTATATTGAGCG # Right flank : CTATGATTTCGTCTCTTTGTTTTTTGTGATAGAGACAAAATTGATCGTGCGATCGCCCATTTGTGTATCCATATCTAAAAATTGCTTGTGGAACTGTATCGCCTGTTAATATTCCTGTTATTTGATCTTACCTAATACTAATTCAATTAATGATTGCAACACATCCTTGGTTCAAGACGCGATGAATCGCGTCTCTACAATATGGTTTATTCGTCACATTCTTTTTTCAAATTGGTATAACCTATTGACCTGCATTGTGAATGTATTGACCTGCATTGCGAATGTATCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAGAAAGTATTGTTTTTCAGTGCGAATGTATCGACCTGCATTGCGAATGTATCGACCTGCATTGCGAATGTATCGACCTGCATTGCGAATGTATCGGCTTGCATTGCAATGTATCGACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 5 3338867-3339573 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPS01000001.1 Westiellopsis prolifica IICB1 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 3338867 36 100.0 38 .................................... GTGATGAGCAGGAATCTGACCTAAGAAACCATCAATCC 3338941 36 100.0 38 .................................... ACGAACTCATTATCAATGCGCGCTGGTTTTTTCCTTGC 3339015 36 100.0 39 .................................... GTTTATTGTATTTTACTACCAACTGGGTCCAGCCTTGAA 3339090 36 100.0 36 .................................... AAATTTCAAAGTTTGAGGATCCAGAAACAGGCGGAA 3339162 36 100.0 41 .................................... TTGCATAAAAGATGGATCCAAGACACACTGCCGTGAGAGTC 3339239 36 100.0 35 .................................... CAAGGATAAAAGTGAAAGACGCAACACCTCCCTTA 3339310 36 97.2 39 ...............................G.... TCAGCAAGGGCTAGTTGAACTTCAAAGATTGCAAAAAGA 3339385 36 97.2 41 ...............................G.... GTACAGGATCCAGCCGATGCGCTCCTTGCGTTTGGGTCGGA 3339462 36 97.2 40 ...............................G.... ATTTGAGTCACCAGCCACGCCAAACGACGAGCGTCTCGAA 3339538 36 97.2 0 ............A....................... | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 98.9 39 CTTTACAATCACGTCGCCCCGAAAGGGGATGTAAAC # Left flank : CGATGTCAGCTCAAATCAGCTTTATGATTGAGCAACTGAAGGAATCTGAGGATAAATAAGTTCTCAGAACTTCCTGAGATTGCAATTTTTGTTGGAAATCAAAGTAAGTCGGCACAAATGTAGAGACGTGCCATGGCACGTCTGGTACTCGTTGGGGTCGTCATTTGTCATTGGTCATTGGTCATTTGTCATTGGTCATTAGTAAGAATTTTAGGCTTGTTTACTTTCCGTAACATGGTTAGGTTTATTCCCGCCTACTTACTTAAGTTGACAAAAAGAGTGAGCGATCGTACTCTGATTTAAGTGTCTCGAACCTCATCGACACACCTCGCCCGAACCTTGAAAACCGCATAATTTCGTTGAGGTGTGTCGATACCTTGTGCAGCAAGGTTTACAGGCTGCAAAATTGGCAACTTTCTGAAATTTTTTTCCCATTTTTCAGAGGTGTGTCGATTAGGGGGTCTAGAATCCTCTCTGTGTAAGCTTTCTAGATGTGAACT # Right flank : CTGGAATGACCAGCCGCAAACCCAGTGATATCAAGTTCAGATAATTAGTTATACTTCCCACAGTTATTGCAACCCCACCCCTTAATCCCCTCCCCGCTTGCGGCTACGGTGTACACACAAGTCTTATAAAGTTGCCTAGTGGCGTTTTGATCCCCCCTAACCCCCCTTGAAAAGGGCAGGGCTGTTTCATTCTTAAAAGGAAAAAAGTGGAAACTTTGAAATCTCGTTCTGTTTTGATTAGATATTCGTTATTAACGAACTAAAAAAGAGGGTTTGAGATTTTACTCTCGAAAATGAAACAGTCCTGCCTTGAAAAGGGGGGAACTAGAATCAAAGTCCCCCTTTTTAAGGGGGATTTAGGGGGATCAGAGGATTTGTGTGTACACCGCAGGCTTGCGGGGAGGGGCTGTTTTGGCGTTAGACAAAACCGGGGTGGGGTTCTTTGAGAATTATGTCGTAGACTACCTTTACCCCTCACGGTGATTAAAACTCTTTATCTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCACGTCGCCCCGAAAGGGGATGTAAAC # Alternate repeat : CTTTACAATCACGTCGCCCCGAAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 6 3376473-3376794 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPS01000001.1 Westiellopsis prolifica IICB1 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 3376473 36 100.0 36 .................................... TTGGTACCAGCCAAATTGAGACAAGTAGTGTTGTCT 3376545 36 100.0 36 .................................... TTGGGTCGAATTCCCAGCTTGAAGCCGAGCTGTCGC 3376617 36 100.0 34 .................................... GGTCCCATATGTTGACGAAACCAATTTCTATTAG 3376687 36 97.2 35 ..........G......................... GTTAAACGCGGTCTGTTATGCGCGGTCACGATGCA 3376758 36 77.8 0 ......G...G....A........A.......TGCG | A [3376788] ========== ====== ====== ====== ==================================== ==================================== ================== 5 36 95.0 36 CTTTACAATCACATCGCCCCGAAAGGGGATGGAAAC # Left flank : CCTCTTGTGGGTGTTTGACAAAGAATCGGTTGTGGCATCATATTAATAAGACCTTACTGAATATAGTTGGGTGGGAGAGGCGTTGTCTACTTGGTCGTGGGAACGCCTCTCTTATTTGTATATTAATACGAATAATTCTTATTTGCAATACCTTTTTAGATATTATTTCATAATATTATATATTTATCATAGCGTTGTGTATACTGAATGTGTCGCGGGAGCAGAGACGCGAAATCACCTTGTGGGATCTTGCTACGCATTTCTACTTGACAAATAAAAGCAGCAAATCATACCCTAATTGAAGTGTGTTGAGTTTCATCGACACCAGTCACCCGAACCTTGAAAACCGCATAAATTCGTTGAGTGGTGTCGATGCTTTATGCAGCAACGTTTCCAGGCTGCAAAATCGATGATTTTTTGAGGATTTTTTGTTCAAATCTAGAGTGGTGTCGATCAGGGGGTCTAGAACCCTCTCTGTGTAAGCGTTCTAGATGTGAACT # Right flank : GATTATCAGTTGCTCATGTCGTAGATTACCTTCACCCCCTCACGGGGATTAAAATTCTTCATCTACCTGGCTTTTTAAAAGTTTATTCAACCAAGAACCGCGATAAATTTAATCATTGATTTGCGATCGCGTAGCGCCTACTTTGCACCATCGCTTTGACGTTTGTGACGAATGTCGTTTCATTCATAAAGAACGTCGCGACGTTAGCCACAAACGTCGTGATGTTCTTTATGGATGTCGCGACGTTACCCACAAACGTCGCGATGTTACCCACAAACGTCGCGATGTTACCCACAAACGTCGCGATGTTACCCACAAACGTCGCGATGTTACCCACAAACGTCACGACGTTACCCACAAACGTCGCGATGTTACCCACAAACGTCGCGATTTTCTGCATGGTCAACGCTCGCTGGTAATTGCAGGTTCATTTACCATTGAGATCGCCATATCTATCATTTGCTGTTGGGACACATCTCTGGTTGAACCACCTCCCAATC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCACATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 7 3381326-3379998 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPS01000001.1 Westiellopsis prolifica IICB1 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3381325 37 100.0 35 ..................................... TCACTCATCCTTCCTAAAGTTTCAAGCGATCGCTC 3381253 37 100.0 37 ..................................... TTGGTTCTAAATCATATTGTTGGACATCTTGTAAATC 3381179 37 100.0 33 ..................................... AGATTGATCGTGCCTTGGGTGGATATGACTTGT 3381109 37 100.0 38 ..................................... TAATAAATTGCGAAATCGTACACGTAAAGCTGAGATTT 3381034 37 100.0 34 ..................................... TTCCGGTAACTCTTTTCTTTGCCTGTATTCAGAA 3380963 37 100.0 35 ..................................... GACTTGCAGTATCGCGATCAATCTGTCCAGAATTG 3380891 37 100.0 34 ..................................... ACTGAATGCATTTTGCATCAATCGCCAGAATTGT 3380820 37 100.0 33 ..................................... GTAGATGGAGATGGATATGTTTTGCTTGGAAAT 3380750 37 100.0 35 ..................................... TTAAACCATTAATCACCCATTGACGGATTCTCTCA 3380678 37 100.0 34 ..................................... TAATGCTTCCAACATTTTGGAGGGTAGCTATAGT 3380607 37 100.0 35 ..................................... TCTTCAAACTGAATCCCATGCTGTTCGCAAAGTTG 3380535 37 100.0 37 ..................................... GCAAGAAGGAAAGACTGTTGATGCGATCGCGCAAGAA 3380461 37 100.0 34 ..................................... AAATATACTTGAGCCGCCCCAGAGTAAACCAAAA 3380390 37 100.0 34 ..................................... ATCGACGCCGCATCCAACACGGTTGATGGTTTGC 3380319 37 100.0 35 ..................................... TTATTGATTCTCCTGTAGGAAAACGATTTAAATCA 3380247 37 100.0 34 ..................................... CAAGATCTGGATAAGGATCAGTAATTAGTTCAGG 3380176 37 100.0 34 ..................................... GTGTATATCGTTTGCACTAAGGGGGATTGGAGTG 3380105 37 100.0 34 ..................................... GCAATACCTCTTCCTGTAGAACTAGGAACATCAT 3380034 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 19 37 100.0 35 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CAACTAGTCTATTATTAAGTTTTGGTGTTTAAGTATAGGAAAAATAGTATTGTTATACTATTTTTTTATCTAGTCTTTTATCTACTGCTTAACCAGTATTTTACCTGACACTGGCCGTGTGTGTATCCTTAAGGGACTTGCAAATCAAAAAACATCCAATTTGTGGGGTGCGCCATACTCTAACAGGATTTTGGATTGACCCCCAGGATTTAAATGCCAATAAATACTACAGTGTTTTTGGCTTGATGACGGTGCAGACCAGTAGGTGTAGAAAAAAAGCAGTCAATTTTTGTGGCTGAAACTCTTATTCTGTCTATGTTAGAAGCTGATTTGATGGTAAATGAGGTCTGCACCTTTTGTGTAAATCTTACCCTGACTAGGTTTGAGCGATTTTATCCTCATTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTACTCTTGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTATATTGAGCG # Right flank : TGTTAATCGGTGGGTAACTCGACCAATCAACTAGTTGCAACTTTTATTAACTCCCAGACAACCAAATATCCTTACACATATAATAGACAATTTGTACAGTGCGTAATAAACCTTTCAAGGTGGATAGAAACAGAAGCATTATCTCAGCTAAAAAGCTGTATTTCCTCTTTGTGTCCTGGTGTCTTGGTGTTTCAAATATTCTTTTTTCACCACCAAGACACTAAGACACCAAGAAAAGAAATTTTCATTTTCCAAATTTACCCTTATTTCAAATACTGTTGCGCCCATAATGCTGCTTGAGTACGGTTTTGTACACCAAGCTGACAAAGAATTTGAGTGATGTAGTTTTTTACCGTACCTTCAGTCAGATAAAGAGTTTGAGCTATTTCTCGATTATTTTTTCCTTGACCCAATAGGGTTAAAACTTCTAGTTCGCGATCGCTAAACAAGTTTTGATAGTTTGTGTGTTTGGATACGGGGGGGTTAATTTGAGCAAAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 300866-300206 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPS01000002.1 Westiellopsis prolifica IICB1 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 300865 37 100.0 40 ..................................... TCTTAAGAAATACCCCGCCGCCAATTATTTCTTCGATGTC 300788 37 100.0 41 ..................................... ACGTTGTTGGAAAAGCTAAAAAGGCATTGGCGCGATCTTGA 300710 37 100.0 45 ..................................... TCCAAACTTGGGTGAGGCGTACGATTGGGATCGTTTAGATCCCTA 300628 37 100.0 39 ..................................... GAAGGACACATTGAGAACGGTTGGAAGTGGGAACGACGA 300552 37 100.0 40 ..................................... TGAATGATGGTGACGTTTTTCTGGTTTCCTGGACTGCCAC 300475 37 100.0 39 ..................................... CATATCAGTCTTCTTTTAAGAAGTCTGATATATAATCCA 300399 37 97.3 43 .................................G... TTTGAGAGCTTCAACAAATTGCTCGAAGACACTCTCGTGAACA 300319 37 100.0 40 ..................................... ATGTCTTTACATCCTGGCTGATTTTTGTAGACGCAATTTT 300242 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ============================================= ================== 9 37 99.4 41 GTCGTAGACTACCTTCACCCCTAACGGGGACGGAAAC # Left flank : CGAAAAACTGCCAAGGATTGGCGCAGGGCGTTACGTTTTTTACGAAGAGTCCTCATTATTATTTGTATAACGCAAATCGCCCACAGTTGCCTATATTTACTGGTTCGCCATTCTTTTGTTCACTGTGCGACTGTCCCTCATGCGGCTCTTGTGTTTTAAGTCTTGTAAAGACTAGAGATTGGAAATCAACGGGGGTATAAAGGCTGAAACTGACTGAATATCTACTTTTCGACGAATGTAACCAATTGTAAAATGAAGCGTGAAAATGACGCAGTGAGGATTCAAAACTATGAATGAGTCAAAGTTTGTAAATAAAAGAAAAGTTAGATTTTTTAGGTTTACTCGTGGCTGTTTTGCTGTAATATGAAAGCTGAAAGTAATTTTTGACGCTAAATGTTTTTTGACATGTGTACGGTACTATTAGGTTACATCACCACTTCCGTGCATTGGCGCAACTGCACCTTGAAAAGTAAATATAGTAAGAGTTTCCACAGGGTAGG # Right flank : TCTTCATTTACGCGACTTTTTAATAGTCCACCCAACCAAGAACCGTAATAAATTTAATTGTTATTTGATCGCTTTCACGTTTGTTGTGAATGAATTCAATGTTAATAAGCAACATTGAAGCGTAGTGAACAAACGCTTTAATGTTCTCTATGGATCAAGGAAGCTTAATAAGCAACATTGAAGCGTAGTGAACAAACGCTTTAATGTTCTCTATGGATCAAGGAAGCTTAATAAGCAACGTTGAAGCAAATTGAACAAACGCTTTAATGTTCTCTATGGATGGAATGATTTTTGTGATCAACGTGAATTTGAAGAGTGTGTAGATACCTAGTACAGCACGAAGATTTTTTGTAATACGTTAAGAAATATCAAAATCTTTGAAAATCTCGTCACAGACAAAGGATAAAGAATTAGATTTTGACACCCACTGGGCAAACTAAAAGCAACACTGATCGTGACCGGATTAAAAAAGCTCACCAGTAATTAAAAATAATTTTGAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAGACTACCTTCACCCCTAACGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 2039671-2040858 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPS01000002.1 Westiellopsis prolifica IICB1 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2039671 37 100.0 34 ..................................... TATTCATATCTGTGTAGTCTCGTTTACCCTCTTA 2039742 37 100.0 36 ..................................... GATTGATTAACAGCAGATACACCCAGTCCACTAGAC 2039815 37 100.0 37 ..................................... GAAAACAACAACCACACGCCAGGCACTGGATACGATT 2039889 37 100.0 34 ..................................... CCCTTTTGGATCTTTAAATTCCTCAACCTCTCCA 2039960 37 100.0 35 ..................................... TGGGGATTTTCTTCGAGTACTACCACCGCTGTATT 2040032 37 100.0 36 ..................................... TGAATATTTTAGATCGGCATAATTTTGCTCTTTCAA 2040105 37 100.0 36 ..................................... TTAATTTGTGATCATACAGAGAAAAAACATTATTTG 2040178 37 100.0 34 ..................................... TCAGGAGATTTAGCTTTAATCTCTGGTATGCCAA 2040249 37 100.0 35 ..................................... TAGCTGCACTCATTGGCATACCAGAGATTAAAGCT 2040321 37 100.0 34 ..................................... ACCCATATCAACATAGCTAGACTACGGCTCAAGG 2040392 37 100.0 35 ..................................... GGTACTAGATGACGGCTTGACTGACGATGAGTACA 2040464 37 100.0 37 ..................................... AATAGATTCATCTCCAGTATTCTTATTGTAGAAAGAA 2040538 37 100.0 34 ..................................... TATTTCATTACTTCCAAACACGACTAAACTTCCG 2040609 37 100.0 34 ..................................... GCTACGAGGTGGGCTAAAGCCGAGTGCATCAAAA 2040680 37 100.0 36 ..................................... AATCAAAAGCAGCAGAGGGGATACAGTCTTTCGAGT 2040753 37 100.0 32 ..................................... TTACACTACCAATCTCTCTCACAAACCAAGTG 2040822 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 17 37 100.0 35 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCGGAAGATAAACGTCGTACCAAAATTCACAAAGTTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGCAATCTGACGGAAACTCAGTATGCTAAACTGAGGGCGCGGTTGGCAAAACTCATTAAAGCCGATGAAGACAGCATCCGCTTCTATTTTCTTTGTGCTTGCTGTCAGGGTAAGATTGAGCGCATTGGCGGTGAAATGCCAATTGATACTACAGTGTTTTTTGCTTGATGAAGGTGCAGACCAGTAGGTGTAGAAAAAAAGCAGTCGATTTTTGAGGGTGAAAGTCTTGTTCTGTCTATGTTTGAGGCTGATTTGATGGTAAATGAGGTCTGCACCTTTTCTGTAAATCTTACCCTGACCAGGTTTGAGCGATTTTATCCTCATTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTACTCCAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATCGAGCA # Right flank : CTTGTCAACAACTTGAGACACAGCGATTAAGCTAGAAAATAGGAATATCAACAGGGAGACGAATGTGAACAGTATCGTTCACTGGCAACAACGAGTAGGGAATCAAAGAGATTGGGTATGGCGGGGTTGGCAAACTCGTTATACTTATATTCGCCCTAGCCAAAATCACCAGAACTCAACCCCCCTAATTTTGCTGCATGGGTTTGGTGCTTCCATAGGACATTGGCGACACAATTTAGAAGTATTGGCACAAAAGCATACAGTCTACGCGCTAGACATGTTGGGTTTTGGTGCTTCCGAAAAAGCTTGTGCGAATTACAATATCCAACTTTGGGTAGAACAAGTTTATGACTTTTGGAAAACATTCATCCGTCAGCCTGTAATCGTAGTAGGTAACTCCCTCGGTTCGCTAGTTTCCTTAGCTGCGGCTGCTACTTATCCAGAGATGGTACAAGGTGTAGTAATGATGAGTTTACCAGATCCATCTTTAGAGCAAGAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 3 2180558-2180975 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPS01000002.1 Westiellopsis prolifica IICB1 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2180558 37 100.0 43 ..................................... CTCGACCGTTCACATGACGAATGGCAAGTTTGAGTCTCACTCG 2180638 37 100.0 35 ..................................... GTCGAGGAGGTGCTCGGTGCATCAGGGGAGGTAGA 2180710 37 100.0 37 ..................................... CCGAACTCGTGTCGTATCTCGGCTCTCGAACGGTTCT 2180784 37 100.0 42 ..................................... TCATAGGGAGTATGATGCGGCTCACGCTCTAATTGTTCTCGT 2180863 37 100.0 39 ..................................... GGAGGTAACTTTATTTTTACCTACTATCTTCTCTTTAAA 2180939 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 6 37 100.0 39 GTTTCCGTCCCCGTTAGGGGTGAAGGTAGTCTACGAC # Left flank : GACAACAGTCATAACGCTGATGTTTGAGAGACAGGACTTACGCAAGATGTGACCGAAAACCTTATTCTTGCGTAGAGGTAATTCATGAATTACCTCTAATGCGCGTTATGTTTTGCGTAAGTCCTGAGAGAGTCTTCTAACTAATGTAATTCACTCTGCAAAATAGGTTGAGTGTGACACTTGCGTAAGTCCTAATAAAGAACATCGCGACATTTGTGGCTAACGTCGCGATGTTTGTGGCTAACGTCGCGACATTTGTGGCTAACGTCACGACGTTTGTGGCTAACGTCGCGACGTTTGTGGCTAACGTCGCGACGTTCATAAAGAACATCACGACGTTTGTGGCTAACGTCGCGACGTTCTTTATGAATGAAACGACATTCGTCACAAACGTCAAAGCGATGGTGCAAAGCAGCTGCTACGCGATCGCAAATCACAATTAAATTTATCGCGGTTCTTAGTCAGAGCAAACGCAGCTTAAAGTATCACCAAATCAATTG # Right flank : CCCTACCCTGTGGAAACTCTTGCTATATTTAGTTTTCAAGGTGCAGTTGCGCCAACGTACGGAAGCAGCGATGTAACCTAGTTGTACAGTACACATCTCAAAAAACATTTAGCGCCAAAAATTACTTTCAGCTTTCATATTACAGCAAAACAGCCACGAGTCAAACTAAAAAATCTAACTTTTCTTTGATTTATAAACTTTGGCTCATTCATAGTTCTGAATCCTCACTGCGTCATTTTCACGCTTCTCTTTACAATTGGTTACATTCGTGAAAAAGTAGATATGCAGGCAGTTTCAGCCTTCATATCCCCGTTAATTTCCAAACTCTAGTCTTTACAAAATTAAATAATCTGGGACTTCGTATGGTGCGGCACTACCATATACTCGCACCTGCTGTTTTGCCGTTGCATCAAGGGGATAAACGCGCAGATTATCCTCGCTAAGTTTGAGTAAAGGTAGCCAGCGCATTACTAAAAGATGGCTCAAAATATTTGTATCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCGTTAGGGGTGAAGGTAGTCTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 4 2187892-2187642 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPS01000002.1 Westiellopsis prolifica IICB1 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2187891 37 100.0 36 ..................................... AAACATTGCTTCTACCGCAGCAAGTCTTTCTTGCTT 2187818 37 100.0 33 ..................................... AAGCTCCCCGTGGTGGGTGCTGATGAAGCGAAC 2187748 37 100.0 33 ..................................... TACTACGTTCAACATAACGGAGTTTTAACTAAA 2187678 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 100.0 34 GTTGCAACTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : GTAAACTCTCTTAGCAGACTGAACATGATAAATTCACTCCTCAATTAATAGCACTTTCCTTATAATAGGTAGCATTATTTCCAAAAAACACAATTTGCGCGAAAGGGTCTTTTCAGCAAGGTTATATGGCTCTCGTAGTCGCAAAAACAAAAAGCTACTTGATAATGTAGCCAAAGCTGTACAAGATGCGGAAAAATCTACCTAAATTAGTTGGCATTGAGTAGGTTTGGGGATATATTGTCAAAGTAATCAAAAACATTGGAGGTCGAGCAATGTTACTTAGTTTCAAGACAGCATTGATACCAAACAACAAACAGCAAACATCATTTAAAAAAGCTTGTGGCGTGGCGCGTCATGCTTATAACTGGGCTAATGCTCACGTTAAAGAAGTGTTAGAACTTCGCAAAGATGACAAGTCAATTAAGATACCATCAGCAATTGATTTACATAAAAAATTGATTGCTGATTTTATTTTGCCCTTCTGACCCTGAACCATTTGG # Right flank : CAATTCTGTATGAAGATGTGCTGACGCGCAGGAAATAAAAAACAAACCGCAAAGGACGCAAAGGACGCGAAGAGAAGATGTATAGAGAGAATTTAGCGCAGTTTCATAAAGAAACGATATAAAGCTACGCCATCGCTCCCTAAAACAGATATTTCTAGCAAGAATAAGACCAAAATCACAGACTTGTCTGTCCTAAATCACAAATTTTTATCTGGAAAATTTCTGTAAAAACTTGGAGATTTATATAGAGGTAGACAGTATACAGTTGTGTAGAATCAACCTCAAACATGATTTTATAGATAATTAAGTTCCAGGAATATCAATGATCAACCGTGTTTTGGATTTGATTTTTATAGATTCCTTTGCGTTTGTCATTAATACAATGTTTGGTAAATTGCTTAAAACTAAAATATGCAATTATGCGAGTGACGGACAAGATAAACACTGTATTGAAGATGAAGAAAATACACAATAGGCTAATGATGAAGGATTTGCAGAAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 5 2353185-2353589 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPS01000002.1 Westiellopsis prolifica IICB1 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 2353185 36 100.0 32 .................................... AAAAAGGAATGCTCATGGGAAAAGCATGATAA 2353253 36 100.0 38 .................................... ACAATCACCCGGCAGTCTCCACCTGCGGCGGCCAAGAT 2353327 36 100.0 42 .................................... TCATTTTGAAGACTTTCATAGCTAACGGCTGGGAAGCCGATA 2353405 36 100.0 37 .................................... TTATTTGCCACATCGGAGTGAACTCCGATGGTATTAG 2353478 36 100.0 37 .................................... CATTGAAGGCTTTTTAGTCCTCCAGGCATATCGCATA 2353551 36 94.4 0 ......G.........................T... | AG,T [2353581,2353584] ========== ====== ====== ====== ==================================== ========================================== ================== 6 36 99.1 37 CTTTACAATCACATCGCCCCGAAAGGGGATGGAAAC # Left flank : ACCTCTTGTGGGTGTTTGACAAAGAATCGGTTGTGGCATCATATTTAATAAGACCTTTAATAAAGGTTGGGTAAGAGAGGCGTTGTCTACTTGGAGGTGGGAACGTCTCTCTTATTTGTATATTAATACGACTGGCTATTATTTGCAATACCTTTTTAACTATTATTTCATAATATTATATATTGATAATAGCGCTGTGTATACTGGATGTGTCGCGGGAGCAGAGACGCGAAATCACCTTGTGGGATCTTGCTACGCATTTCTACTTGACAAATGAAAGCAGCAAATCATACTCTAATTGAAGTGTGTTGAGTTTCATCTACACACCTCGCCCGAACCTTGAAAACCCCATAACTTCGTTGAAGTGTGTCGATGCCTTATGCAGCAAGGTTTCCAGGCTGCAAAATTGGCGACTTTCTGAAATTTTTTTTCCATTTTTCAGAGGTGTGTCGATTAGGGGGTCTAGAACCCTCTCTGTGTAAGCGTTCTAGATGTGAACT # Right flank : CTATCAGTTGCTCATGTCGTAGATTACCTTCACCCCCTCACGGGGATTAAAATTCTTCATCTACGTGGCTTTTTAAAAGTTTATTCAACCAAGAACCGCGATAAATTTAATCATTTATTTGCGATCGCGTAGCGCCTACTTTGCACCATCGCTTTGACGTTTGTGACGAATGTCGTTTCATTCATAAAGAACGTCGCGACGTTTGCCACAAATGTCGTGATGTTCTTTATGAATGGCGCGACGTTACCCACAAACGTCGCGACGTTTGCCACAAATGTCGCGATGTTACCCACAAACGTCGCGATGTTACCCACAAACGTCGCGACGTTACCCACAAACGTCACGACGTTACCCACAAACGTCACGACGTTACCCACAAACGTCGCGATGTTCTTTAGACCTCTGGTGAAAAAGAATAGACCTCTTGCATGAATCTTTGCCCTCTCCCTAAATCCCTCTCCCAAACATGGGAGAGGGACTTTGAAATTGGCTCCCCTTCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCACATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 4287-2983 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPS01000013.1 Westiellopsis prolifica IICB1 scaffold_232, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 4286 37 100.0 44 ..................................... TTGACTAACTCCATTGCATTTCAATATGCAACGGAGCGCACCAA 4205 37 100.0 41 ..................................... TGAATATTTAGAGCCAATTCTTGAACTTTTAAATTTGCTGC 4127 37 100.0 42 ..................................... TTCTGATCTTGTTGTCTAAAACCTTTTTGAATTTCAACAGAA 4048 37 100.0 44 ..................................... AAGCGCATTATCAGTGTCTTTGCGAATATCTCCAGTAGAAGGAA 3967 37 100.0 44 ..................................... CTTTGATGTAAAACCGCTCTGCCGTTGTCGGGTGCCTTCCTGGG 3886 37 100.0 46 ..................................... TTAATCTTTCTTTAAACGTCCCAAAGCTTAACAAATAAACTCCTAC 3803 37 100.0 42 ..................................... TTGATTTTGAGGGATATTTTCGTTACTCATCTTTCATCTCCT 3724 37 100.0 38 ..................................... AAGGTAATCACGAGTCTGATTTGCAGCTTCCATCTCCT 3649 37 100.0 44 ..................................... TTGAACTTCGAGGTAGTCTGAGGGGACTACGATGCGTGCTTCGC 3568 37 100.0 40 ..................................... ATTATCACACCACGCACGAACAGCGCGGGTAGAATTTGAA 3491 37 100.0 41 ..................................... TCCAAGTAAAATCTTGGATAGAAATTTTAGCAATTTCCTTG 3413 37 100.0 43 ..................................... AAAACCGTGATATCGGCAGACACTTGAACCAAATACACTCTTA 3333 37 100.0 40 ..................................... ATTAACGTTACTATTGATTTTCCTACAATCCATAGCGTAT 3256 37 100.0 40 ..................................... GGGGTGAAGACATAATTTCCCGGTTGACACTCAATTCCCT 3179 37 100.0 43 ..................................... TCCTCTAACGTCCTCAGATTCGTTCGCAACATAAGTTCTGTGA 3099 37 100.0 43 ..................................... GAGGACAGTAGCGCCCTGTTACTTGTTCTAGAGGGGCGTCCTT 3019 37 94.6 0 ................................A..G. | ========== ====== ====== ====== ===================================== ============================================== ================== 17 37 99.7 42 GTCGTAGACTACCTTCACCCCTCACGGGGACGGAAAC # Left flank : CTGCGGCTAAGGGTTTGGGCAGTTTGAAGTTAATCGATTCGCGCTCGATGGGTGTCATGTCTACACTAATGTATGTACCAAGTGTAGAAATTGTACAGCTGGATGGGGTATGTTTTTCCCCAAGAGGTGAGGAGTGAGGATGGGCGATTGGCTTGTTTAATTTTGTAAACATCACAAGTTGAGGTTTAAGGGCTATGTGAATCCTGAAAGTCTCTTCATATCAAGCTTTGGTGGATTGTAACGGAATGTAAAAAAGCCGATGAAAATGACGCAGTGAGGATTCAGGATTATGGATGAGTCAAGCAAAGTAAATAAAAGAAAAGTTAGATTTTTTAGTTTGACTCGTGGCTGTTTTGCTGTAATATTAAAGCTGAAAGTAATTTTTGGCGCTAGATGTTTTTTAACATGTGTACTGTACAACTAGGTTACATCACTGCTTCCGTACACTGGCGCAACTGCACCTTGAAAACTAAATATGGTAAGGGTTTCCACAGGGTAGG # Right flank : CAGAGTAACAGGGCAGAAAAAAGAAGCGATCGCACTGGTGATGTTTTAATCAATAATTGCGCTTATTGCTCCAATGGACGCAAACCCACTTGAATCAACCTTTTAGCAAGCTGAGTATAACGCTGCTGTTTGTTAACAGAACGCACAGCCATACCAATGGCTTTTTGAGAACCAATCACAATTGCTAGCTTTTTAGCACGGGTTAGCCCAGTGTAAAATAAATTACGACTAAGCATCATGTAATGTTGCGTGTACAAGGGCAAAATCACCACCGGGTATTCAGACCCCTGGGACTTGTGGATAGTAACGCTCCAGGCAAGGGCAATTTCATTTAAGTCTGCATAGTCGTAGTTGACTTCCCGTTCTGCGTACTGTACTGTAACTTCTTGTTCTTCAGTATCAATGTTGGTAATAAACCCGACATCACCATTAAACACTTCCCGGTTGTAGTCGTTGGTTTGTTGAATCACGCGATCGCCTGTTCTCAAAATTGTTCCACC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAGACTACCTTCACCCCTCACGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //