Array 1 184563-184805 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRT01000003.1 Neisseria mucosa strain NCTC 10774, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 184563 33 100.0 36 ................................. GACCTGAATGAAAAGTAGATATAAAAATACGATTTC 184632 33 100.0 37 ................................. GACTGCGTCAGCCCGTGCTTTTGGCGCAATGCCTTGA 184702 33 84.8 38 ........................AT.CT.A.. GCTTTTCAGACGACCTCAAGCCAAGGTCGTCTGAAAAT 184773 33 90.9 0 ..........C........T..........A.. | ========== ====== ====== ====== ================================= ====================================== ================== 4 33 93.9 37 GTCGGAAGACTTGCCCCACGTATCGGGGATTAA # Left flank : ACCTCGTGTGCATTATCGATTACAAATCCAACCATCTGGGCGACAACGCCGAAGCCTATACGCAACAAGCCATGAACGCAGCCGTAGCAGACCACCACTACTACCTGCAAGCGCTCATCTACGCCATCGCCGTAGCCCGCTACTTCAAACTGCGCGGCAAACCGTTACCCAAAATCGCCATCCGATACCTCTTCCTACGCGGATTGGACGGCACGGACAACGGCATCTGGCAATGGGACTTGGATACCGAGTCCTTGGCGCAATGGCTGTAAATGGAAGCACAAAGGTCGTCTGAAAATGTTAAAAAACATTGTGAAATGCAAAGCAGACGGCTATAATCCGCCTCACAAGTTTTCCGACGGATAGCAAAAAGTCTGTCTTTCGGCGGCTCTTTTCAGTTAAGATTTTATTAAATAATGTTTTTGTTGGTTAAGGAAAAATGCTAAACTTTCTTAACTATATAAAAGACTGAAAATAATGGAATTTTTTAACCGAGCGCA # Right flank : AAATCAAACAGCCTTGATGGTTTTGTTCCATCAAGGCTGTTTTTGCGTCTGGCGTATTGTCAAGCGGCTTGGATAATGCGGTATTGCCCGTTGCCGAATACCGTTTCTTTGCCCAAGTGCAGCCATTGCCCGATATACAGCATTTGCGAGAAGGCGGGCGGAAGGTCGGTCAGCTGCCATGTACCGATTGCGCCGCTAAGGGGCGTAATCTGCTTTTGACGGTTGGAAAAACGGCGGTGCTCGTGCCATGAAAGCCGGGGCGGGACACCTTGTCCGCCGATTTGGGCGGACAGCTCGGCAGCGTTTGCATTGTTGCCCCAGTGCAGATGGGCAAGCGTCAGATAGCGGCGCATAAGCTGGCGCAGGAAAACCGCCTGCGTCAGTTCGGTTTCCCGCAAAATCCTGCCTTTTTGCTGGATACGCAGAGGCGTCAGCAGCTGAATATGCGCATGGGCGGGATAGCGTTCGGGCAGCCTGATATGGTTGTCGTGCAGCGCGAT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACGTATCGGGGATTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 188629-187753 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRT01000003.1 Neisseria mucosa strain NCTC 10774, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 188628 36 100.0 34 .................................... GTAGTTATATTGTTTGTAATCAGCCATTTTTAAG 188558 36 100.0 35 .................................... GTCGGTAACTCGATACGGGTTTTGAACCAGCATAC 188487 36 100.0 34 .................................... GCCAAAATTTCCACTTTTGCGGCGGTGGTAATCG 188417 36 100.0 33 .................................... AAGTTTCTATCTGTTAAACAATGACGCAGATAC 188348 36 100.0 34 .................................... TCGTGGTCGTGGTCGACTACCCAGTCCGTCTTGT 188278 36 100.0 33 .................................... GCGGACTTATGATTTTCCCGTAATTGGGAATCT 188209 36 97.2 34 ....................A............... TGCCTTGTTTCTATTGTATTTCACGTTACATCAC 188139 36 97.2 33 ....................A............... TGAACAAGCTCCTCAATAGCCTCTAAATACTCA 188070 36 97.2 36 ....................A............... GTTTGCAGTTCGTTATAAGTTTCAAAGGTAGGAAGG 187998 36 97.2 32 ....................A............... CAAATAACATCGACGAAGGGAAACGTATTCCA 187930 36 97.2 35 ....................A............... TTTTTTCGGGTTTTCCTTGAAGCCTCTCTGTTTCA 187859 36 94.4 35 ......................A............T TCCTTGGCAACCCGGTCATAACCATAGAAGCCAAA 187788 36 80.6 0 ...A...............G........G..TCA.T | ========== ====== ====== ====== ==================================== ==================================== ================== 13 36 97.0 34 GTCGGAAGACTTGCCCCACTCATCGGGGATTAAGAC # Left flank : GGCAAGAACGAATGGCAGCGCAAACAAACATGACCGTAGGCAATCAAGCGCACGATACATTCTATAAAGAATGGAAGGCAGCCCTGCAAACTGCCGCAGAAAGCCCCGATTTCAGCGCAAAGCAGAAAGCCGAAATCGCCGCCGCGTTTGACGTCAAAAAGATGATGGCAAAATACGCGAAATGGCTGACCGGCAAACGCCCCAAAGAGCTGAAACCCATCTTGGAGAAACTGAGCGGCAAATAGATTTTCATCTTTGTCAAAGCCCAAGCTTTTCAGACGACCTAAAGCCGCAAAACAGTTAAAAATCGTTGTCGAATGCAAAGCAGACGGCTATAATCCGCAACACAAGTTTTCCGACGGATAGCAAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAAGGTTTTATTAAATAATGTCTTTGTTGGTTAAGGAAAAATGCTAACTTTTCTTAACTATATAGAAGATTGAAAATAATGAAATTTTTTGACTGAGTGCA # Right flank : CTTTTCAGACGACCTCAAGCCTGGGTCGTCTGAAAACGTAGGTCGGATTCTTGAATCCGACAAATATTCCGACGTTTCTACATAGCAAAACAGCCTTGATATTGCATCAAGGCTGTTTTTGTTGGCGGAGGGTTTGTGTGAGTTCGGGGTCGTCTGAAAGGCGGCTTCGCGCTTACAGTTTGCCCACGCCGCCCAAGATGATGCCTTCGGGCAAGGCGGGTTTGCCTAGGGCATGGATTATGCTGCTGTTGGGCAGGGGATAGCAGCGTCAATTACCCAGCCGCCGCAAGCCCCGATTTCAGCGCAGAGCAGAAAGCCGAAATCGCCGTCGCGTTTGCCGTCAAAAAGATGGAGTAGGCGTATAAAAACTGGCTGACCGACAAGCGCGGTAAAGAGCTGAAACCCATCCTAACGAAGCTGCGCGGCGAATAGATTTTCGGCTTTATCGAAGCCCAAGCTTTTCAGACGACCTAAAGCCGCAAAACGGTTAAAAATCGTTG # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTCATCGGGGATTAAGAC # Alternate repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 189242-179008 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRT01000001.1 Neisseria mucosa strain NCTC 10774, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================== ================== 189241 33 97.0 33 T................................ TTTGATACTACTCAATTTCACAAACAAAAAAGC 189175 33 100.0 36 ................................. TGCTTTTAGCTGCCTGACAATTTCTTCAGCCGTGAA 189106 33 97.0 34 A................................ GCCTTCGGGTATATCGAAGTAGTTTATTTTTTCG 189039 33 97.0 33 T................................ TGATTTGAAACCAAATTCAACACTTGCACCCAC 188973 33 97.0 33 A................................ CTGCCCGCCTGCCACGTGGCGAACGTCCCCGAA 188907 33 97.0 33 G................................ ATCTTGATAACCCAACATCCCCGCCTGATAGAC 188841 33 97.0 34 A................................ CTAGTTTTTTAATATTAAGGGTAGCTGGAAAGCC 188774 33 100.0 33 ................................. AAGATGCGTGTCGAATTGATGCTTTAGCTGCTG 188708 33 97.0 34 T................................ AATAAAATCATGAACCTCTAAATCAGTTTTAGTT 188641 33 97.0 33 A................................ CATGATATACTTTGACATATCAAGAGCGCGCTT 188575 33 97.0 34 T................................ TTTCAGACGACCCATGGGGTCGTAGTCGTACAGG 188508 33 100.0 35 ................................. CCGTCTGAGCAGGCCTTGAGACAAAAAGGATACGA 188440 33 100.0 33 ................................. ATCGCAATATGTGTGCTGACCTGCACCTATTTT 188374 33 97.0 33 G................................ GCCACGTGGCAGGGGGTGGGGTAAAAAACACAC 188308 33 100.0 33 ................................. TGCGATATGTCCAGTCCTATTGTGTTCATGGGA 188242 33 97.0 32 T................................ TGCCGATTCGTGTATGAAACCGCTCTTTTCCG 188177 33 100.0 33 ................................. ATTGATAGGGGAAAAGGTATCTCAATTAATTGC 188111 33 100.0 34 ................................. CCAGCTTGAATCACCCGCGTCCAAACATTGTGCG 188044 33 97.0 33 G................................ TTCGGCAGACTTGTACAGCCCATACACGCTTTT 187978 33 97.0 35 A................................ TTTGATGATTTTTTGTTGTTCCGCAGGCGTTTGAG 187910 33 97.0 32 A................................ TGTACCTGATACCTATCGCAATAGCCATGCTT 187845 33 97.0 33 G................................ GGCATGGTTGGTCTGTTGGTTATTCAACATACG 187779 33 100.0 33 ................................. CAGACTGAAAGCCTTAAAAAAAACAGTCGTACT 187713 33 97.0 35 A................................ TTCTGTCAGATGGGGCTTGGGCGGTTCGGACGGCG 187645 33 97.0 34 T................................ ATCGTCAGGGCAACTCGCACAAGCAGCACAACAG 187578 33 97.0 33 G................................ ATCGTCAGGGCAACTCGCACAAGCAGCACAACA 187512 33 97.0 35 G................................ ATCAGTTCTTCATGGTTGGTCTGTTGGTTGTTCAG 187444 33 100.0 34 ................................. TATATTAGGTCTTGGTCTAACATTAGAACCTGAA 187377 33 100.0 34 ................................. AAAGTATATTAGCAAACATATCAACAGCCGCCTG 187310 33 100.0 34 ................................. TGAGCTTGTTTATAAGCTCTTGCGGCAAAATCCG 187243 33 97.0 33 A................................ GGTTTTTGCCTGCTGTTCGCGTTGGTCTAGCCA 187177 33 97.0 34 G................................ TACCGCTATCTTTCGGACGCTGAGGCTATGCTGG 187110 33 100.0 38 ................................. TATGATACCGAAGTTTTATGGCCGCGAGGGCTGCGAAT 187039 33 97.0 33 A................................ TATGTAGGTATGGGGTATCTTCAAGCCTTTGAT 186973 33 97.0 33 G................................ ATTACTTCGTACTTGGTCTTGTCGTTTGTGCGG 186907 33 100.0 34 ................................. TATTAGTCCACGCAGATGAACGTCTATCAAGCGG 186840 33 97.0 33 G................................ CAACAAATTCAAGCTCGTAACTACACAAGCGCA 186774 33 97.0 33 A................................ GTTGGCATTCGTCAACGACGATAATCGCACCCG 186708 33 97.0 32 G................................ TGATTCTCTTGGTTTTGATTTTGCTGCCCTGT 186643 33 100.0 34 ................................. CATTAAAGGTAGTCAGTCGAAAACCATAACCGCA 186576 33 97.0 32 A................................ TGCATTTGCCATTGATAAAAACGGTCTCCAGC 186511 33 97.0 32 T................................ AGCCGTACAAAGACCCTTACGACATGTACGAA 186446 33 100.0 34 ................................. ATGAGCAAGCCGTATTCAAGCCGTACAAAGACCC 186379 33 97.0 32 T................................ CCAATCGGTACCAACCGATTCACCACACGGCA 186314 33 97.0 34 T................................ CGTGAATGCTTCCGCCGGTATAAGCATCGGTGGA 186247 33 97.0 32 T................................ TTGTTCGGCCAACTCAAAAGCCGCTAGATCTG 186182 33 100.0 35 ................................. TATGACTTCGAAGAAGCGGTTAACGCAGGCTTGGA 186114 33 97.0 32 A................................ TATCAACCTTTTGCCTGCTTTATCTTTCCATA 186049 33 97.0 32 G................................ GGCTGGTGGCGGTAGCAATCAAGGTAAGAAGA 185984 33 100.0 34 ................................. CGTCCTGCGTGATTGCGCCAAGTTGGGCGTATAG 185917 33 97.0 33 G................................ TGAAGCAATAGTCGAAGTTTTGAAAGACGGCAA 185851 33 97.0 32 A................................ GATGCAGAATCAACACCTGAAACCGCAGAAGC 185786 33 97.0 33 G................................ AGGGTTTGAAATTAAAATTTCCTATGACTTTGT 185720 33 97.0 35 T................................ AATCCCTACAAGGAAAAAAGCCGTGAAGAACGGTA 185652 33 97.0 33 T................................ AGGGTGTGGGAGGCGTTGAGAAACAGGCTCCCT 185586 33 97.0 34 T................................ GCAAAGAGGCTGTTATATGCATACCCGATTAGTT 185519 33 97.0 33 G................................ CAAGCCTTGGATTTTTGCGAACATTTTCATAAT 185453 33 97.0 35 T................................ TATATTGCATAAAAGTTTGAGGAAAAATGACACAT 185385 33 97.0 33 G................................ CAAGCCTTGGATTTTTGCGAACATTTTCATAAT 185319 33 97.0 35 T................................ TATATTGCATAAAAGTTTGAGGAAAAATGACACAT 185251 33 97.0 34 G................................ TCGGTGTGTGAGGTCATGGATGATTTCGTTCAGT 185184 33 100.0 32 ................................. TCCGCCATATCGGGCATGGCTTTGGCGATGGC 185119 33 97.0 34 G................................ AGGATGCGACAAGCCAAGCTCCGCATCGCCCTGC 185052 33 97.0 34 G................................ GCCTGTTTTAGATACGGCCTCATCATAATGAATA 184985 33 97.0 35 A................................ CGCCTTTATCGACCAAATCAGCTTTTCATTCCATG 184917 33 97.0 33 A................................ AGTTTTTAGAACATGGCTTTGAATGCAAAGAGT 184851 33 97.0 36 T................................ ATTTGCTCAAGCGTTGCCTGCATTGCCAAAAGTATG 184782 33 97.0 33 G................................ TACATCCACCGGAGGGTAATAAAACAACCCGTT 184716 33 97.0 34 T................................ TGGAAAATGTCGCTGGTCATCCGCCGTATCATTG 184649 33 97.0 33 A................................ AATTTTTGTTTAACTCACTAAAGGAAAACATCA 184583 33 97.0 34 T................................ AGACGCAGAACCAAGGCAAACCGACCGTAACGAA 184516 33 97.0 35 G................................ CCGTGACTGAACAATGTAAACGCGGGTAATTGTCA 184448 33 97.0 34 T................................ AAGTGCAGTGTATTGGATAAGGAAACACATCATG 184381 33 100.0 35 ................................. ATACGAAACTAGCGTTACACCAAGCCCTAAAAGGA 184313 33 97.0 38 G................................ AAAACATTTTTTTTCGCTCGCCGCTGGGCAGAGGTTGG 184242 33 97.0 35 G................................ AAAACTTGCCTTATTGAAATTTATTCTATTAAAAA 184174 33 97.0 40 A................................ CAAAGTTCGTTGCCGTGCTGCCCGAAGGCGCGCCCGATTA 184101 33 100.0 33 ................................. CAAAGGTACCAGCCATTAAAACACCACTTTCGA 184035 33 100.0 34 ................................. CGTTCAATTCGACCAACATCGTTTCTCGCTGGCC 183968 33 100.0 32 ................................. TATGGTTACGGGTACGGTTGAGGCGGAGCGGA 183903 33 97.0 32 G................................ TTTAGAAATATGAGATTCATAACCCCTACTTT 183838 33 97.0 35 T................................ AGCCATACTAAAACAGACAAAGCAGATTCAAAGCT 183770 33 97.0 34 G................................ TATTCGGTTGTACGAAAAGGGGAAGCAGATAGCC 183703 33 100.0 33 ................................. AGTCTCGGGAAACGGGGGACTTCCTATACCCGT 183637 33 100.0 34 ................................. GAAAGTACCCGACTACGTCGCCGAGCTTGAAACA 183570 33 100.0 35 ................................. TTTTTGCTTATCATCCTCTTTCGGCTTGTCGTCGG 183502 33 97.0 34 G................................ AGCCCATGCTTGACCAGCGAGAGCCAGAGGGACG 183435 33 97.0 33 G................................ CCTAGTCTTAATGAGATTTGCATTTGATTCATT 183369 33 100.0 34 ................................. TAAATCTATGCCAAAATCATCGGCAAAAGCTTTA 183302 33 97.0 34 G................................ TTTATCGTGGGTTTATTGACTGAACATCATGATG 183235 33 97.0 34 A................................ GCCTGTGCGCCTAATGTTTCGCGTATTGCTTTGT 183168 33 100.0 33 ................................. GGTACCAGCTTTGTTGTTGTACACGTTCACGCT 183102 33 100.0 33 ................................. GCATGATGGCGACTATTATCAGTTTCGGGGGCT 183036 33 97.0 34 T................................ TGTATGTCTTGGCTCGCTCTTGGTCGTAGGGCAG 182969 33 97.0 34 G................................ TTAAAAACGATGCTCCTACTGCAAAAATAACCCG 182902 33 97.0 36 T................................ ACGAATATAAAACAAGGTTTTGCTTGTTAACAAGTA 182833 33 97.0 35 T................................ ACGAATGTCATCGCGTCCCGCGTGATGTTTATTCG 182765 33 97.0 33 G................................ AGCCGTGCTTTTTTTGTTTTTGATGTTTGGGTC 182699 33 97.0 33 G................................ ATGCGAAGACCTGCGGCGTGGGTGGCAAGATTT 182633 33 97.0 34 T................................ GCGCGTCCATTCGTGGGTTTTGAAAAAAAACGGC 182566 33 97.0 33 G................................ CGATTGATTGGGTTCGGTTGGAATTGCAGCTCC 182500 33 97.0 34 G................................ AGCGGAATCATCGGTGTAATCAACAATATCTTTA 182433 33 97.0 33 A................................ ATCATCCACCAAAACACATGGGTAAATCTTCCT 182367 33 97.0 33 G................................ TGCGACAATTCCAGATGACCCGCAAACTGTTAT 182301 33 97.0 33 T................................ ACCCGATGAAGAATCTGATTTCTTACCATTACC 182235 33 97.0 34 A................................ ATACTCATCATGAATAAATTGCATGTAATGACGT 182168 33 100.0 35 ................................. ATTTTAGTCGAGCTATATTTTATGTTTCATAGATA 182100 33 97.0 35 A................................ AAGGTTATAGATGGCAAATTGACAAATACAACGGG 182032 33 97.0 32 A................................ CCGCTCGCCCTATGCCTCGTCGGTTATGGCGT 181967 33 97.0 33 T................................ CACAACTGTTTTTTGTCTATGGTGGTACGGATG 181901 33 97.0 34 A................................ TTTAAAAATCAGGAAACGCAGTAACCGCCCTTCA 181834 33 97.0 34 G................................ CGCCATCTGCTGTTTCAGCTTGTCGATAGCCGAT 181767 33 97.0 32 T................................ CTGAAGGTTATGACAAAGTTGCAGGATACGTC 181702 33 97.0 34 T................................ CCGACATAGCAATGCAACTGGCCTACATTCTCGG 181635 33 100.0 34 ................................. CGGAGTAATATTGGCTGTATCGCAGCACTCCCGG 181568 33 97.0 33 G................................ AGGTGGTCGCAATGGTTACAAATATGCCTATCA 181502 33 97.0 34 T................................ TCCGTCAGTTTTATGCGAGGTTATCGAATGAGCA 181435 33 97.0 34 A................................ GCTGTCTGCGTAGATGCAGGCGACGACACGCATT 181368 33 97.0 33 G................................ ATAGACACCATGCAGATTTGGGCAGGGCGCGGA 181302 33 97.0 33 A................................ AAGGAAGAAGAATAAGGATTTGATATGTTGAAC 181236 33 97.0 33 G................................ AAAAAACCTATTGCATTACCTCATTTAGCGAGG 181170 33 97.0 32 T................................ GATTTGAGATTATATAAATCACCATATAAATA 181105 33 97.0 34 A................................ ATTGGTAAAAAACCATCTCGAACGGTCAATCTTT 181038 33 100.0 34 ................................. TGAAGCGTCTATACACGTTAAATGGCGTTCCTAT 180971 33 97.0 33 G................................ CTCGAAATTGCCACACCTGCAATAGACCGTAAT 180905 33 100.0 33 ................................. AGGTTCATTTTGTTTTCCTTTACGAAATGTTGA 180839 33 97.0 33 T................................ TTCTGTCAGATGGGGCTTTGGCGGTTCGGACGG 180773 33 100.0 33 ................................. AGCAGATGAAAGAATGGCTGCAAGAACACGAAG 180707 33 100.0 34 ................................. TTTATGGATACCCCTTGACGCTAACCCACCCAAA 180640 33 97.0 34 A................................ GTGTGTGAAATGGCAAACACGACCGACTTGATAA 180573 33 100.0 33 ................................. AGGATGCCAGCCGATTTGATTGGCTTGCTTGGA 180507 33 97.0 34 T................................ CCGACGGGAGCAGGTGAACTAATACCAAACCCAA 180440 33 93.9 33 A...A............................ CTTAAAAATAAAGGTCGTCTGAATTTCAGACGA 180374 33 100.0 33 ................................. CATGTTTTCACGGAGGACTTGCCAAAGCTGACG 180308 33 100.0 35 ................................. TACCGATGTTTTTAGTATCATTGATAGGCGCAGCA 180240 33 97.0 33 G................................ ATTGGGACACCTCTTTGCTGATAATTTCGCAGA 180174 33 100.0 34 ................................. GCCATCTGGCATCATATGATGATTGGTGAACTTA 180107 33 97.0 33 ......................G.......... ATTTTTTTATCAATTTTGATGTTATAGGTGGTT 180041 33 97.0 34 G................................ GACGGTTTCGGTGCGGTATCGCGGGTTGTCGCTG 179974 33 97.0 33 A................................ AAAAAGTTTATTCCATGAAGGTTGTCGGTCAGA 179908 33 97.0 32 A................................ CATAAAAGGTAGTCAGTCGAAAACCATAACCG 179843 33 100.0 35 ................................. CCACAATGCCGATTTGGCGAATACGCAGAAGCAGG 179775 33 100.0 35 ................................. CATGTCCAGCTTGTGTTTATCCAGCTTCTCCCATG 179707 33 100.0 33 ................................. ACATTATAACCTTTTTAAAAATCTTGATAAGTA 179641 33 97.0 33 T................................ CAAAATCAGACGACCTTGCAACAATCGACCGCG 179575 33 100.0 36 ................................. ACACCCAGCCGATTGGGACAATATGCAAGACATGAG 179506 33 100.0 35 ................................. GTCGTTGAATTGTTTGGCGAGCGCAGTCATGCTCG 179438 33 100.0 32 ................................. CAGCCTTTACAGCCCGTCTCAAAGCGAGGGGG 179373 33 97.0 34 A................................ AAAGACAACATCTACTATTCGGACGAAGCGTAAA 179306 33 100.0 33 ................................. ATCGTGTAATTTGTCGAAACCCTCGCGTCCGAA 179240 33 97.0 34 A................................ CACTTCTTTGAGCAATTTCAGGATTTCACGGCAG 179173 33 97.0 33 A................................ ATTTTTCCGCTCCCGCAGGCTCCAAAACCACGC 179107 33 97.0 34 ........T........................ ATCCTAGTAACGATTTGGGTCTGACCGGTATTAT 179040 33 87.9 0 T............A....A...C.......... | ========== ====== ====== ====== ================================= ======================================== ================== 154 33 97.8 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCAGAAGGACAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGATATTGCGCCCGACCAATGGGTTGTTTTAAAAGACAAGCTCTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTATTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCCGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGCAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCTTAGCGAAATTGGGGTTGTGAAACCTGACGGAGCAAGGCTTTTGAGAGAGGC # Right flank : CCGTTGCCGAGGGAGCAGATGTAGAGGCGCAGGCCCAGCCATCTTCAGCTAACCATATGTCGAAACCAGACGGTGCTTTCCTGATTTAAACCGCCTGTAACCATCTGCTTTTTGATGGTTATGTCTGAAAAATCATATGTGGAATAGGAAATCGTTAATCCATCAAATCTCTGTCTTTCAGACGATTGAAATCGGATTTGTTCTATTCTGATTAAATCGGATTTTTCCAGCTTCGGGCTGCCGGATAAATTTGATGCAATGCAGGGTTTGATTGGCAAGGGGCTGGATAAAAATGGCAGCTTTGTTATAATAAAACTACTGGCAGTTACATACTTTTCTTGGCATTGCGCCGTTTTATTCATATTAACGAAAGAGGAAAACAAAATGTTTCCAGAATATCGCGATTTAATTTCCAAATTAAAACAAGAAGACGCCCACTTCGCCCGTCTGTTTGATGAGCATAATGAGTTGGACGATAAGATTACAGGTTTGGTTAACAA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //