Array 1 44057-40210 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLL01000001.1 Porphyromonas gingivalis strain WW5127 NODE_1_length_217206_cov_27.5567_ID_19735, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 44056 46 100.0 30 .............................................. CCTCCTCTTTGAGGGTCTTTATATTGGGAA 43980 46 100.0 31 .............................................. TTCTTCGTTATTTATTTCATAGTGCGTCAAT 43903 46 100.0 30 .............................................. ATACCCCTGGGCGTTAAAGATATGCTTTAA 43827 46 100.0 30 .............................................. CGTATATCTAATACAGATACTATCATTCAA 43751 46 100.0 30 .............................................. CGCAAACAATGAACCCTCGTCGGCAATCTC 43675 46 100.0 30 .............................................. AAGAATAGCTTGAATAAAGCACTTGAAATA 43599 46 100.0 30 .............................................. ATTTTAAAAAACTAAATAAAGCAGAAATAA 43523 46 100.0 30 .............................................. GGTGCCGACCCAATAGATCGACACCGAAAC 43447 46 100.0 30 .............................................. CTTCTTCTGACTTCAGCCACGGGAGCGTCA 43371 46 100.0 30 .............................................. GGCTTCAACATTATAATCAACCTGCCCCGC 43295 46 100.0 30 .............................................. ATATTATCTGGTAAACCATAAAATACAACT 43219 46 100.0 30 .............................................. CGCGTGTACGCACGCACGTACATTATTATA 43143 46 100.0 30 .............................................. ATCTTCGTCTGCTAACAGTATTTCGTCTTC 43067 46 100.0 30 .............................................. CAAAATTTGGTTTGGATATATATGAAAAAA 42991 46 100.0 30 .............................................. AGCCCGACGGATTGAATACCAGGTCGAGCG 42915 46 100.0 30 .............................................. ATAACCCGGATTTTCTGTCTGTGGCAGAGA 42839 46 100.0 30 .............................................. CACGCTGTTTGTTTCCACGCATCAGGCCAT 42763 46 100.0 30 .............................................. TTGACCGCATCGGCGTCAAGATGATGACAA 42687 46 100.0 30 .............................................. GTGCCGACCCAAAGGATCGACACCGAAGCT 42611 46 100.0 30 .............................................. AGATAGGGTTCTAAGCCCTATCTGCACCCT 42535 46 100.0 30 .............................................. CGCATCGGGGATCAGCTGTACCCCGCTTAT 42459 46 100.0 30 .............................................. GGTTTTGGATAGCTTACCTTTTGCTACTCC 42383 46 100.0 30 .............................................. ACAAATCCCCCGTCTCCGGAAAGGCGGGGG 42307 46 100.0 30 .............................................. CACTCGTAGAGGTTAGGCTTATACCCGATG 42231 46 100.0 30 .............................................. CGTTTAGAAAAGGTAAAGCTATTGTTGCTC 42155 46 100.0 30 .............................................. CGCACGCCAACGATGGGCAGCATCTTTGCT 42079 46 100.0 31 .............................................. GCTTTGATACCGTCGAGGAGCTGGCGGCCCG 42002 46 100.0 30 .............................................. CGGTCGGTCTGTCCACATACCCACGACGGC 41926 46 100.0 30 .............................................. TGTAAGAGCCTCTCGCTTGCATAGGCATGA 41850 46 100.0 30 .............................................. TCTACCACCTGTGCGCGGACGGCATCGGCT 41774 46 100.0 30 .............................................. GTCCGACGTGGTCGAGCGTCAGTACACGAA 41698 46 100.0 30 .............................................. AGCAAAAATTCGGACAGGATTATTTTTTTC 41622 46 100.0 30 .............................................. TTCGTTATAGAAATCCTCCAATTTTTTTTC 41546 46 100.0 29 .............................................. TTCATCAGCCACATGAACCGCATCGATTG 41471 46 100.0 30 .............................................. CAGAGGGCTTGCGGCCTTTCAAATGGGTAT 41395 46 100.0 30 .............................................. GGTCTATTATTGTCTTTGTTGCAAAGTTTC 41319 46 100.0 30 .............................................. ATCATGGCACCGTCTCCGGTATCAAGCGCG 41243 46 100.0 30 .............................................. GGCAGGTGGAGCCTCCTTTCGGCGACACTT 41167 46 100.0 30 .............................................. CGCGCCAAGCTATTGCACTATTCATACAGC 41091 46 100.0 30 .............................................. CGCATAAAATTGATTTTGTTGCGTGGGTTC 41015 46 100.0 30 .............................................. CCATCTATTACTATGATAGATAAATTCAAT 40939 46 100.0 30 .............................................. CGTCCTCGCACAGGAACCCGTACACCCCGC 40863 46 100.0 30 .............................................. TACCACCTTGAAACACCTTTCCCGTTATGC 40787 46 100.0 30 .............................................. AGCGAAACGGCAAAGAGCGCAGCTCCATCA 40711 46 100.0 30 .............................................. CAGCATCTTCAGCTGCGACTGGAAGGACGT 40635 46 100.0 30 .............................................. CTACATACTCTTCAGCCGCGCCGTCCTGTG 40559 46 100.0 30 .............................................. TGATGGTCAGCGAGCTGCAGGCCGACCTCG 40483 46 100.0 30 .............................................. GGAGCTAAATAATACCCACAAAAGAGGCTA 40407 46 100.0 30 .............................................. AACAGAGCCGCCTGCCCCCTCTGGCTTAAT 40331 46 100.0 30 .............................................. AGAGTCGTTTATTCGTTCTTATATTGAGAA 40255 46 97.8 0 ...................................T.......... | ========== ====== ====== ====== ============================================== =============================== ================== 51 46 100.0 30 GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Left flank : ATGAGTCATTACAGATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGAAACTGCAGCCGACAGGAAACGTGCAGCAATCTTTCGGAAAAATCTGATTAAAGATGGTTTCGAGATGTTCCAATTTTCTATCTATATCAGACACTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGGGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCAGCCATGGAGATCATTTGTGGGAAAGGAAGAGAGTATTATCAGCCACCCCTCCAGCTTGAACTTTTTTAAATATATTCTATCATCTTTTGTGGAATTAGTGCTTTTCGTCTGGGGCATAGAAATTAAAAAGCCGAGAGAAATCTCGGCTTTTCAGCTACGCACAGTTGTTTTTTTCTTACTCACAATCACCCTCTATGTCCTGTATTACAGGTGATTACGGGGATTCT # Right flank : AGGCCAGCTGGGGTGTGACGGGGTATAACGTCTATGACTACGAAAAAGACGGGAAAACTTACAGAGTCGGGTTCGAGGTAATAGAGAAAGAGGCTGCGAGGTGGAAGCAGCCGTATTATGTAAAAAAGAAAAACTGATCAGGGTCAGTTACGTGCTAAAAAAATCGCCCGAATTCGCGTCCCTAATCAGCTTTCTGTACTGCAAATATAAACAAAGTTTCTGAAGCTGCGTTGCAACAACATTACTAAATCTGAAAGCTATTCCCTGTGAAAAAAGGGAGACCACGAAAATAATAATCTGCTCAAAAATCATGCGCCAAAAAAGTTTTCAACAACGAAGACGAGTTTGGAATGATTCCAAATAAGCATCCATGGAGAAGAAAAAAGCAAGGTAAAAGTGGAGGGAAAAGGAACTGCCACAGATCGAAATACCACTTAAAACAAGTGAGACAACGATCTGTATATAAAACATTTTCAATTTATATATAAATCGTTTTCGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 47602-46576 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLL01000003.1 Porphyromonas gingivalis strain WW5127 NODE_3_length_134669_cov_29.0682_ID_19739, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 47601 36 100.0 31 .................................... CGCTCAAAACGACTCAAGAAAAACAAATGAG 47534 36 100.0 30 .................................... CGACATATCCAACAAAGACCTTCAAGCCTT 47468 36 100.0 30 .................................... AGCCAAGAAAAAGTAATGACTATCAAACTT 47402 36 100.0 29 .................................... GCACCTTAAAGGTGTAGATACGGTTCAAG 47337 36 100.0 30 .................................... CGCGGCGTTTACATGGAATGTCATGTAAAT 47271 36 100.0 30 .................................... AGTACTTCTTTCAGCAAACGAAAGCGATTG 47205 36 100.0 30 .................................... AAAGCAGGTGGCGGAGGCTACCACTTCACT 47139 36 100.0 30 .................................... TGCGAATAACAAAAGAATAAAATAACAGCA 47073 36 100.0 30 .................................... ATGAATACAAAAAAATTTTCAAAACTGAAA 47007 36 100.0 30 .................................... CTTCGAGCTGGCTTTCGTATAGCCATTTGG 46941 36 100.0 30 .................................... CAGAGAATATATCGATGCAAGTAGTTGTAT 46875 36 100.0 30 .................................... AATTAGGCGGCCTTATAATGTGTGCAGTAT 46809 36 100.0 30 .................................... ATCATCCCTACAGGGATATTATTCAAAAGT 46743 36 100.0 30 .................................... TGATAGAAAATATCGACGTGCTGCCGCTGA 46677 36 100.0 30 .................................... AGGGATAACGGTCATCTGTCCGCCGATGTC 46611 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : TATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGCGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGACACCTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCTATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAAAAAAGGAAAGCACTCCCCGACACGAATTCACCGAAGAGGGGAGCACCTCGTCCACCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAGGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGTTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGACCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //