Array 1 27031-25087 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJAP01000037.1 Natronohydrobacter thiooxidans strain AH01 AH01_contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 27030 32 100.0 36 ................................ GAAACCAAAGGTCGCGCGAAACGTGGTCCCGCGCTT 26962 32 100.0 33 ................................ CTGACTTTTGACGGTTTCAACACGAAATCGAGC 26897 32 100.0 34 ................................ CGCAGCTTGATGATTTCTCGGATTGTCTTGACGC 26831 32 100.0 35 ................................ GCGCCCTCGCCGCAGAGCGAGACCAACTTCGCCGA 26764 32 100.0 34 ................................ ATCTGTCGTCCTGTCGCCAAGGATTTTCGCGATC 26698 32 100.0 34 ................................ GCGTTGTCCTCAATCCATTTTTCCAGTTTGTCAC 26632 32 100.0 33 ................................ AGCGCCAAAGGCAAGCGCTACGCCTGTCATGTC 26567 32 100.0 33 ................................ CTTCCGGTTATGCGCGTGAAAACGAGTTGGTCG 26502 32 100.0 34 ................................ TTCACATCAATCACGGCCACTGACAAAGCCGCAA 26436 32 100.0 34 ................................ AGCGCCGCGCGTGAACTCGAGAAATTGAACTGCG 26370 32 100.0 33 ................................ GCTTGTGCTGACCCAAGTGACATAGAGGTTTTC 26305 32 100.0 34 ................................ GATGTCCTGATATCGATAATCCTTCATGCCGATT 26239 32 100.0 33 ................................ CCAGAACCGTTAAAAGCTCCGTCAATGGTTCTC 26174 32 100.0 35 ................................ ATCCCATATGCGCGCGCACCTGTCCGCGTATGCAG 26107 32 100.0 33 ................................ CCCGTCCGGGACAAACCCACCGGTGACGAACAG 26042 32 100.0 34 ................................ TCTGCCCATTTCGCCCGCATGGCTCAGGAATACT 25976 32 100.0 34 ................................ GAGGTCAAGAGCCTTGACGAAGGCGGCAAGATCG 25910 32 100.0 35 ................................ GCGTCCAGCATCAAGCGGGCGCGTGAAAGCGGCAG 25843 32 100.0 33 ................................ CGTGTGGTCTGTCTCCATCGAGACCAAGAAAAT 25778 32 100.0 33 ................................ CCCTCCATCTCGGCTAGGTATTGGCGGGTGCGT 25713 32 100.0 35 ................................ ACCTATGGCATGGTCAAGCGCGACACGCCCCGCAC 25646 32 100.0 34 ................................ CAGTATATCGCCCATCTGTTCGTCACCGGTGGGT 25580 32 100.0 33 ................................ TTTCGCGTCGGGTCGAGCGGGTTTATCGCGCAT 25515 32 100.0 34 ................................ GCCTCTCCCGTCTCTCTGCGCTTCGGCGGGCAGG 25449 32 100.0 34 ................................ GCTGTCACGCTACATTCGACTGGGCGACCGAGGC 25383 32 100.0 34 ................................ TGGATGGGTTCAGCCTGCCGACCGCGGAGAACAG 25317 32 100.0 34 ................................ TGCCATCAGGCCCTCGCCGTTCACGCGCAGGCTG 25251 32 96.9 35 .C.............................. ACCCCCGCAGAAGTCGCCCAAGCCCGCCTGCACAC 25184 32 100.0 34 ................................ GCCTTTATGGCCCGGAACAGAGGCTTTGCCGAGC 25118 32 93.8 0 .....................T....C..... | ========== ====== ====== ====== ================================ ==================================== ================== 30 32 99.7 34 GTCGCCCCCCACCCGGGGGCGCGGATTGAAAC # Left flank : TCTGGAGATAGCGATGCTGGTCCTGATTACCTATGATGTGAAAACCGAGACCGCCGCGGGCCGCCGTCGTCTGCGGCGTATCGCGCAGGCCTGTCAGGATTTCGGGCAGCGCGTGCAATATTCGGTGTTTGAATGCGATGTTGACCCGGCGCTCTGGACATCCTTGCGCGCGCGGCTCCTGGCAGAATATGATGAGACGGAGGACAGTCTGAGATTCTATCATCTGGGGTCGAACTGGAAGCGCCGGGTCGAGCATCATGGCACCAAACCCGCGACGGATTTTGACGGGACGCTGATCCTCTGACGGGCCTGTGCTCTGCCCTGTGCGAAACCCAAGCGCACATCAAAACCCCGGCCCTTTCGCGTTTTATGCAAGGGATTGATATCGTGAATAGATGTTGTCTTGTTTGCTGAACTGGCAAGCAACAAACCGCCCTGTCCTCTAGGTTCGCAAAGAGCAGTAGTTTTGACCAGCGAAGATAATCTGTTAAGAGGCGAGA # Right flank : AGGACGCCGCGCCCCGGCGTTGTTGCAGAACCCCGACCGCCCTGATACGCCGATGTATGCGCAGCGCGCATTTCATATCGTCGAAAGCCATGTCGGGTTTTGCCGGATACCCCATGCCGGAGCATTACCCGGACTATCCCCAAGGACTCTCATTATGAACAAGGGACGACCGGGGGCAGGTCACTCTGGCAGGCGATCCCGCTATACAAAGGTGCGTCCGAGACGGTAAAGCATCCTCCAAGAGGTCTTTGACATGCTCGCCTGAAATCGGGCCAGCCATATAGACCATCCGCGCTGCACCTCAGTGCAACAGTCCCGTTCGGCGGGTTCCGCTGCCTGGGCATCATGGGCGCCGCACCGGCCGTCGCGTGACGACAGCTTCGCAATGGGAGATGGACATGATCCGCAGGATAGCAAGATTTCTCGCATTTCTGAGCGTCGCTCTCTGGGGCGCTTTGCCTGCGTCTGCGGCAGACGAATTGCATATCCTGACCTCATAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCACCCGGGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //