Array 1 41736-39454 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRAM01000007.1 Campylobacter jejuni strain CB363 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 41735 36 100.0 30 .................................... TATTCAATGACGTCGATTTTACGATTTGAA 41669 36 100.0 30 .................................... TACTTATAAACACTTGATTGAAATGGACTA 41603 36 100.0 30 .................................... ACCTTTTTTAAGAGTATGAGAGACTTTCTT 41537 36 100.0 30 .................................... GACAGCCCGCCTAGAACACTCCAAAGAATA 41471 36 100.0 30 .................................... TTTATTATTGTTTGAATCTACATAATAACC 41405 36 100.0 30 .................................... AAATAAAATATGCGAGAAGGCTAAAATATA 41339 36 100.0 31 .................................... TAGTAGATGATGAATTTGCTGAAATTAATGT 41272 36 100.0 30 .................................... CAAAAAAGAATATTAACCCCTAAGAAATCT 41206 36 100.0 30 .................................... CACTGTTCTTGGATTAGATTTTAATTTTTT 41140 36 100.0 30 .................................... AAAATGTGCTTTTTTTGCTTTTAAGCAAAA 41074 36 100.0 30 .................................... TATATGTGCGGAATAGTAGGCATGCAATCA 41008 36 100.0 30 .................................... ATATTTTTACCTATAGAGCTAAGCAGAATA 40942 36 100.0 30 .................................... ACAAAGGAAGACTAGAGTTAAACTTTGTAA 40876 36 100.0 30 .................................... TAATTACAGATAATAAACTCGGTATAAAAG 40810 36 100.0 30 .................................... AATATCGATGATAGAATGGCTTCAACTATA 40744 36 100.0 30 .................................... ATAATGATTAACTCAATAAACGCTCAAAGA 40678 36 100.0 30 .................................... CAACGAAACAAGAACCTATACAAACAAATA 40612 36 100.0 30 .................................... TAAACTCATTTTTTTTGTAGCGTTAGCGTA 40546 36 100.0 30 .................................... AAGCAAATAGCCTTTGCTGAAAAACTTGCT 40480 36 100.0 30 .................................... AAATATACATAATAGAGAAGATATATTGAA 40414 36 100.0 30 .................................... GCAATTTCGCTAGGATTAACAGGTTGAAGA 40348 36 100.0 30 .................................... TTAGCTAATGAAAAAAGTAGTATGCAAGAC 40282 36 100.0 30 .................................... TCGAGAATGGAGAGTATCCATCTTGTGAAA 40216 36 100.0 30 .................................... AGAACTAAATCTAAGAACTAATGAAGGTAA 40150 36 100.0 30 .................................... AACTAAAAGAACAAATTAAAGCACTTGAAA 40084 36 100.0 30 .................................... CACGACAAAAAGATATCATTGATGATTTTA 40018 36 100.0 30 .................................... AATATATAAAAAAGGCAGTAGATACTTTAA 39952 36 100.0 30 .................................... GATAAGATGAAAAGAACTCTTAATGCTCTA 39886 36 100.0 30 .................................... TGATTTCATCTATTGCAGGTTTTAAAACTC 39820 36 100.0 30 .................................... TAGAATATAAAAAATGTTTTTATCCACTAG 39754 36 100.0 30 .................................... TAAGCCGTATCGAAAACCACCTAAAAGAGC 39688 36 100.0 30 .................................... GGGGCTACCCTAATTTTTTAGAGCTTGTCG 39622 36 100.0 30 .................................... TTCAATTAGCAAAGGTGCAGAAATGCAAGA 39556 36 100.0 31 .................................... AAAAGCTTGAAAAAGAAAATCAAGAACTTAA 39489 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 100.0 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGATAAAAT # Left flank : TTCACTTTCAAAAGACATGAAAAATACAATCTAAGCGAAGAATGGCTTAAAGCTATTGAAAATTTTATAAGACAAAGAGCTGAAAAAGCGTTAGAATTTATCAAAACTATTTAGATTTATATAATGATAAATGATTTTAGTTTTGATAAATTTGAAATTTATGAAAATTTGGTCTTTAAAAAAATACAGCAAAGATATAGAATAAATTTATAAATATAGCTGATACCTTCAAAGAAGGAATTTAAATAATGAAAAAAGAATAAGCTTCAAATCGCAGAACATATTTTACAAATTTGCTATTGAGGAAATGCTACTACAACCCCTAGTTTTATAGTAGAACATATCCAAGATAAAGACTTTGAAAATTTAAGCTTAAAAAACTTGAAATTTAGGTATAATACTGCTTACTATGTCGTTTCATAGTTAAGCCTTTAGGGTTATTTCCGCCAAGAGTGCAAACTCAAGGCGGGTTTTATTAATCAAATCTTGCTTTTTATTCT # Right flank : ATTCCTTTATCAAATAATGAAATTTTAAAGATTTTCGAGAATTTTTGATGAAAAATAGCAAAATTATGCTACAATATTTACAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTAAAATTCAAATAAATTTTGCTGATGGTATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTGGTTTCGTTATTAACTTTTTCATTAAAAACTATACCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAACATAAAATAACCTAATTTTATAAGATTGTTTCTAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //