Array 1 32867-32533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERKD010000005.1 Levilactobacillus brevis strain Dm-2019-31 scaffold5_size190039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32866 29 100.0 32 ............................. GATAATCAAGTTTACGTGAGAGTTAAGGGTGC 32805 29 96.6 32 ....................T........ CATCATATCCCACCCTCATATCCATTAATGGG 32744 29 96.6 32 ............................C GTTCTCCGCTAATCTAGCCGTCTATGATACTA 32683 29 100.0 32 ............................. TAATGGATAAAGTCAAAGCTGCTGAAAGCGAG 32622 29 93.1 32 ..........................T.C GGCCAATGATGTTGAATTGCGCTCGGGTGTTA 32561 29 69.0 0 ..T........AT.....T...CAC.A.C | ========== ====== ====== ====== ============================= ================================ ================== 6 29 92.5 32 GTATTCCCCACGGGTGTGGGGGTGATCCT # Left flank : CGTACCCGGCCGTGTTCCATGATAATGAAGCTGGTGGGTATATCGTAACTTTCCCCGATATTGAAGAAGCTATGACCAGCGGCCAAACCCTAGGCGAGAGCCTGGTCAACGCGACAACCGTTCTCGGTCAGACGCTCCATCATCATCCGATGGTACTGCCAACAGCGACGACCATCACTGAGTTGATGCATCAATACCCCATGGCATTCATTCAGTTTGTCGCGGTAGATTTAGACCAAGTCATCGAACACGCAGTACCAACTGATCAAGCAGACCTACAATTGACTTAGTCATTGATGAAATAAAGCATAAAAAGCCGGTCCCGGTTAAAGGGATCGGCTTTTTATTATGTATGAGAGTGAGTTGTCGGATAACGAACCGGATTGCTGTCGCTACGATTCTGCGGTATGCTATAAAATATAGATGAGTCTCATGACGAAACTCATAAAAAACGCCGGTTTTTAAATTTTAAAATTCCGGTGTGGCGGCGTTTCTTTAGT # Right flank : AGTAGTTGTTCTCTTCTAATTGCCGAATATAATAAAATAACAGCGTACCTCAATCATGGGTACGCTGTTATTTTTAGTTTACTCAGCAAGACGAATGCGAATATCGCCAATCTTTTGTTTTAGATGGTTAATGGATCGGGTTAGTGTTGTGCGTTGTTCTTCCGATGCGCTTAACTGGGCTTGGAGAATGGCCAAGCGTTCCCGCAGCGTACTATCACCTTGTTCGTAGGTAGCGATGAACTGCTTCATTTGCTTGATCGTCATTCCACATTGTTTGACGCAGAGAATGAAGTCCATTCTTTCCAAATCAGTAGTGTTGAAGTCCCGGATACCGTTGATGCGGTTAATGGGGCCGATAAGTCCCTGTTGTTCGTAGTAACGAATGGCCGATGTTGAGATGTGGTAACGCTGAGCCACAGTTTCGATTTTCAAAAATGATCACCTTCTTGACTTAAAGTATACTTTAAGTGGTAAGGTTTTCAACAACGGGTAAATCAGCT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.60,-10.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14411-14561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERKD010000006.1 Levilactobacillus brevis strain Dm-2019-31 scaffold6_size175200, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14411 29 100.0 32 ............................. CTTATCAACTGAACCAACTGATACACTAGTGC 14472 29 96.6 32 ............................T ATTTCGAAGTGAGAAGTTTGAGCTTTCCAATG 14533 29 89.7 0 .........................A.GG | ========== ====== ====== ====== ============================= ================================ ================== 3 29 95.4 32 GTATTCCCCACATGTGTGGGGGTGATCCC # Left flank : TGGAACCATATGATGATTTCAATGTGATGGGAGCGGCATTTTGCCAAGCCCATCCGGAGCAGGTCACCCAACAGCCGCTAGGTCAGCACCATCAGGCCAGGGCGATAGGGATGCGGGCGCTGGTCGACTTTGCGCGCGAGTATTATCGAAAAAAAGATCGACGCGAGATGAGCTAAAAAGTACAAGATATAAAAGCGTAGTTGTTAGCCGCGGTGAACGGAGTAGCGGCTACGTTTTATTGTATTATATAGTCTTCTATCCTTTGATTGTATCAAAAGGTAGTCACGATACTTTGGAACAGGCTAGTGATTTGGCGGCCTGGCTACGTAGATTAAGCAACTGGATCGTTACTAGCAATCTAAGTCGAAATTACTTACAAAAGTAAGGCCACAAATTCCGATTGTTAATCAAATATGAGTAGGGTATGCTTTAATAGTCAAAGTGATAAAATTTGCTGTTTTCTCTAAATGAAAATGCTGGTATATCAAGGATTATTTAGT # Right flank : GAGGCGTTTCAAAAATGATTGTAATGCTGCGCTTAAATCAAAATAGACTTTTTATGGAAAGATAATTGATAGAACAGATCACCCAACAGGCGCTGGATCGGTACCAGTAGGCCATGGTGATAGGATGCAGGTGTTGGGCGACTCTGTACGAGGACATTATCGAAAAAAATCGGCGTGAGATGAACTTATCGAGGAGTCTATCGGGTATTCAGGCACGGGGATCGTATGTATAAATGAGGCTAGCTGTTAAGAAATAAAGTGCTGGTGGTTGACAAAGTTAATGGCTCGCGTTATATTAATAATCGAACGATCGATCTTTTAAAAGGAGCCAATCATGCGAGAAAAAGATACGGCAAAACAAACGAGTATTATTGATGAGGTCAGTAATATTATTTTAAACGAGGGAATTGCAGCAGTCTCAATGTCCAAGATTGCTAAAGCAAGTGGCATTTCTTCATCAACGATTTACGTGTACTTTACGGATAAGGAAGATGTGTTAA # Questionable array : NO Score: 3.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //