Array 1 295-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTM01000278.1 Salmonella enterica subsp. enterica serovar Dublin strain NCTR-SF35 NODE_278_length_303_cov_1.90086, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 294 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 233 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 172 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 111 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 50 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGTTACAT # Right flank : GCTCCAGCGCTCGAATTTATTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [20.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48861-47384 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTM01000007.1 Salmonella enterica subsp. enterica serovar Dublin strain NCTR-SF35 NODE_7_length_154835_cov_4.69536, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 48860 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 48799 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 48737 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 48676 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 48615 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 48554 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 48493 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 48432 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 48371 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 48310 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 48249 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 48188 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 48127 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 48065 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 47962 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 47901 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 47840 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 47779 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 47718 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 47657 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 47596 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 47535 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 47474 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 47413 29 96.6 0 A............................ | A [47386] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66547-64993 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTM01000007.1 Salmonella enterica subsp. enterica serovar Dublin strain NCTR-SF35 NODE_7_length_154835_cov_4.69536, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66546 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 66485 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 66424 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 66363 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 66302 29 96.6 32 ............T................ GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 66241 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 66180 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 66119 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 66058 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 65997 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 65936 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 65875 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 65814 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 65753 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 65692 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 65631 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 65570 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 65508 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 65447 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 65386 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 65325 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 65264 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 65203 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 65142 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 65081 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 65020 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //