Array 1 17043-21768 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB290903.1 Aggregatibacter actinomycetemcomitans Y4 Scfld496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17043 28 100.0 32 ............................ TTAGTTTGAGACCAGTAGCCACCAACTCCAAC 17103 28 100.0 32 ............................ TATTCGGCAGTGAAGCTTTAATAATAATATGC 17163 28 100.0 32 ............................ TTAAAGAAGGTAAAACATGCAAGCCGATTCAG 17223 28 100.0 32 ............................ TTAGCAATGTGTGAGTTGACTTGTTGATTTGA 17283 28 100.0 16 ............................ NNNNNNNNNNNNNNNN Deletion [17327] 17327 28 85.7 32 NNNN........................ ACAATATTCAAACGCGAAATTAGCCCTTCTTC 17387 28 100.0 32 ............................ TACCATGTATCAGGGACCGGTTTAAATAATTA 17447 28 100.0 32 ............................ ATTAAGTCGTCAATTGATGACAGAAATTTTAA 17507 28 100.0 32 ............................ CAATCGGTCACGAATGTCGAAGAAAATTATGG 17567 28 100.0 32 ............................ CAACCAAGACCAAAAATTTTCAGATTATGAAG 17627 28 100.0 23 ............................ TGATNNNNNNNNNNNNNNNNNNN Deletion [17678] 17678 28 96.4 32 N........................... TGATGCCTTTGGCGGTTCCACTCAAATTGAAA 17738 28 100.0 32 ............................ ATCAGGCTGTTTACATTTTTTATAACCGAAAC 17798 28 100.0 33 ............................ CCGGGAACTCCCGGTGATAATAAAGGTGATGGT 17859 28 100.0 32 ............................ AAGCGTTTTTCACCTCTATCATCAACACCCGG 17919 28 100.0 32 ............................ GTATGGATAACCCGTTAGGATTTATTGTGACA 17979 28 100.0 32 ............................ ACACCAAATTTTGAGTGATGAAGAAATAGACC 18039 28 100.0 32 ............................ TAACAGGCATTGGGAAAGAAGCAATGGCTCGT 18099 28 96.4 32 .......T.................... ATTCAAAATTTGCTTTGCTTGTGACATATCTT 18159 28 100.0 32 ............................ TGAGGAAAAAATACCAAGTGGCGCATTTGGCC 18219 28 100.0 33 ............................ CTGTACCAGATATATTGTAGGCACGACCACATA 18280 28 100.0 32 ............................ TTCTATCTGCTCTCTTTGATACAAATAATAGC 18340 28 100.0 32 ............................ CGTGAAAATTTGATATTTTTGAGAACCTTCTA 18400 28 100.0 32 ............................ TAATGTTTCATAGAGATTGATAAAACGTTGTT 18460 28 100.0 32 ............................ TGAAATTGTCTCAGTAAGTTTTTAAGGTAAAT 18520 28 100.0 24 ............................ AGAANNNNNNNNNNNNNNNNNNNN Deletion [18572] 18572 28 100.0 32 ............................ ATTATCAGTTTTTACAAATTTCCAACCTATCC 18632 28 100.0 32 ............................ AATAAATTGTTTGGTTTGTATTTAATTTAAAC 18692 28 100.0 32 ............................ ATCATGAAAAGCGCTGGAATAAGTGTGTAATG 18752 28 100.0 22 ............................ TANNNNNNNNNNNNNNNNNNNN Deletion [18802] 18802 28 100.0 32 ............................ TACCTAAAGCAGATATACGAAAGATTCGTTTT 18862 28 100.0 32 ............................ TACAAAGGAAAGATAGTGGAAATAAAGTACCG 18922 28 100.0 32 ............................ TGTTGGCTATGCTACCCTACTGCTTTAATTGA 18982 28 96.4 19 ...........................N NNNNNNNNNNNNNNNNNNN Deletion [19029] 19029 28 100.0 32 ............................ GATAGCCTTGTTGAAGAAGGGCTAATTTCGCG 19089 28 100.0 32 ............................ AGAAATGGTAAATGGAATTGCTAAAATACCAC 19149 28 100.0 32 ............................ TGCGTTTTCGCCAAATTCTTGATCTAAATCTT 19209 28 100.0 32 ............................ AAGAAAACAAGCAAGTGTGACTAATCCTTCAA 19269 28 100.0 32 ............................ ACATCACGCCCACAACAACTTATTTCAATAAA 19329 28 96.4 18 ...........................N NNNNNNNNNNNNNNNNNN Deletion [19375] 19375 28 96.4 32 N........................... TTATGCGTTTTGTTATTCGTCGTATTCCGATT 19435 28 100.0 32 ............................ TTAATGTCCTTTCTAAATCGGGAGTTTGCAAA 19495 28 100.0 32 ............................ TTCATCGAATGAGCTATTCATTTTATAGTCAC 19555 28 100.0 21 ............................ NNNNNNNNNNNNNNNNNNNNA Deletion [19604] 19604 28 100.0 32 ............................ AAGTGATTAATGTCCAACAAGAAATAGAAGCA 19664 28 100.0 32 ............................ TTTTAATGGAGCAATCAAACTATATGATTTAT 19724 28 100.0 32 ............................ TAATCGCTTTTCAATGTAATGTATGGTTACAC 19784 28 100.0 32 ............................ TTAAAGACGAAAACATTCCGGTATGGAATTGT 19844 28 100.0 32 ............................ TCTTTCTTAGGTTTCAGAAGTTGATAAGGAAC 19904 28 100.0 32 ............................ ACAATTAAAACTCCAATTTTGTGCCCTTTTAC 19964 28 100.0 32 ............................ AAAATGATAACATTCTCAAGTTTTCTGCTCAT 20024 28 100.0 20 ............................ NNNNNNNNNNNNNNNNNNNN Deletion [20072] 20072 28 100.0 32 ............................ TGTTAGACCTAGCAACACGAAATAATTATTGA 20132 28 96.4 31 ...........................T GAAGCAAAACAATTTGATACATTTGCGATTG 20191 28 100.0 32 ............................ TGTTCCCGAAACATTGTAGGCACGACCACATA 20251 28 100.0 32 ............................ AATGCCTGTTAGACCCAACAAAACAAAGTAAT 20311 28 100.0 32 ............................ TTGAGCTTGTGTAGTTTTATCGTCATGGTTGA 20371 28 85.7 19 ........................NNNN NNNNNNNNNNNNNNNNCAT Deletion [20418] 20418 28 100.0 32 ............................ AACGATATTACTGTCAATTTTTTTTGTTTCAC 20478 28 100.0 32 ............................ TATGACTTCTACAATTTGATTTTCAGATAAAA 20538 28 100.0 32 ............................ CACCTCGGGGTTCTCTGATTCAATTTTATGAA 20598 28 92.9 17 ..........................NN NNNNNNNNNNNNNNNNN Deletion [20643] 20643 28 96.4 32 N........................... AAAATAAAAAAAAATATTTTTCGTCCGATTTG 20703 28 100.0 32 ............................ TATAATGTATGCCCACGATGGCAGCTGGTACT 20763 28 100.0 32 ............................ TTTATATTAAAGCTGATTATCTTCTAAGAATT 20823 28 100.0 20 ............................ NNNNNNNNNNNNNNNNNNNN Deletion [20871] 20871 28 100.0 32 ............................ AAAAGCGATCGCATGCTCCGCAACTGCAAAAA 20931 28 100.0 32 ............................ AGAAATAAAAATTATCTTGCTTTGTAATATAA 20991 28 100.0 33 ............................ CTCTATGCCGATAAATTGGAGTTCTTACACCCT 21052 28 100.0 21 ............................ TNNNNNNNNNNNNNNNNNNNN Deletion [21101] 21101 28 100.0 32 ............................ AAGATGATAACATTCTGAACTTTTCTGTTCAT 21161 28 100.0 33 ............................ ATTCTTCTACCAGTATTTGAACAATACCTTTTA 21222 28 100.0 32 ............................ ACCAGCACCAGAAGATTAACTAGTAATATTAA 21282 28 100.0 32 ............................ ATACAACCGGCAATTCTGTTTTATAAATTTTA 21342 28 96.4 20 ...........................N NNNNNNNNNNNNNNNNNNNT Deletion [21390] 21390 28 100.0 32 ............................ AAATCAGAAAGATAAAAAATGTAAGTCCAAAG 21450 28 100.0 32 ............................ CGGGTATTACAGAGCTGCAAAAAGCATATAGC 21510 28 100.0 32 ............................ ACCTGGTGTTGTAAAGGGGTGACGTTTGAAAC 21570 28 96.4 23 ...........................N NNNNNNNNNNNNNNNNNNNTCAC Deletion [21621] 21621 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 21681 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 21741 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 82 28 99.1 30 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : ATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTCTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //