Array 1 19206-20820 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACMYD010000001.1 Corynebacterium sp. zg-331 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19206 29 96.6 32 ............................G AGAGGGCCAGAACGGTTCGAGCCGGTGGAGCT 19267 29 100.0 32 ............................. ATGGTGCGTACTGCAGTGGGTACGGGTATGCG 19328 29 96.6 32 ............................G GCTCGACAGGCCATCAACCGCAGACCCAATCA 19389 29 96.6 32 ............................G GGGCTCTAGGATCGCCGCACCCATCGACGCCA 19450 29 96.6 32 ............................T CTCTGTGTGGGTTGTGTGAGAGCTGAATAGTG 19511 29 96.6 32 ............................G AATTTCCCAGGATTGCCCCGGACGAGGCTGTA 19572 29 96.6 32 ............................G TTCTCCTCCCCCATGCAGATCGGATAACCCCG 19633 29 96.6 32 ............................G TTGTGCCGAGTTCCTGGGCGTAGGGCAGCATT 19694 29 100.0 32 ............................. TCCGCGGGGCTACGCTCGGAGATTCAACGTGC 19755 29 100.0 32 ............................. AGCTTGTGGGGGCAGGTCACGGCGGCGTTCTC 19816 29 100.0 32 ............................. GATGTCCTCGCCCCAACACAGGTTTGGGAGTT 19877 29 100.0 32 ............................. TCTGCTGGATTCAAAAAGGCAACCAGGGATAT 19938 29 100.0 32 ............................. CCCAAGAGGCAAACCGGGAGGGGGAAAGGGCG 19999 29 100.0 32 ............................. GCCGCCATGGCGGGTTCGGGGGCCGTATCGCG 20060 29 100.0 32 ............................. GCCACCTGGCGCGGGCCCGCCGGGGCAGCCGG 20121 29 100.0 32 ............................. CTTGACGGAGCGTTCCTTGAGACCGCGCTTTT 20182 29 100.0 32 ............................. CTTTCTGTGTTGGTGAACAAAAAACAAGCCCC 20243 29 100.0 32 ............................. TCCGAGGCCTTGTTGGATGCTTTCATGGTGGA 20304 29 96.6 32 ............................G AAATCCCGCGCTTACGTCATGGAACAGGCCCA 20365 29 100.0 32 ............................. AGCGCATCGTAGCGGGTCCCCGGAATACGGTT 20426 29 100.0 32 ............................. CCCTCAACTTGCCGCAGCGACAACTCATCCCC 20487 29 96.6 32 ............................T CGACCCCGCCGAGGCCTTGCGGTCAAGGAAAC 20548 29 100.0 32 ............................. CGCATGGTGGATCAGTGGCACGGTGACGGCTG 20609 29 100.0 32 ............................. GAGGCGTGGTAAAGCCACCAAGATCGGCGTGC 20670 29 100.0 32 ............................. CATGAAAGCGGTAGCAAACAGCACCAGAATCG 20731 29 96.6 32 ............................T CGAACCCACCCCTCGGCCACCAGGCCCAGGCC 20792 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.6 32 GTGTTCCCCGCGCTAGCGGGGATGAGCCC # Left flank : ATTGGTCTCATAACCCCAATCCTGCTTTATAAAGGGGCCAAAAGAAGCGATGCCAGCGGAATTAATGGCAATGTGCACGTGCCGATTAGCCAGGTGCTCGATGAGGCGAGTGACCTCGTCCTCCTCGGCGAGGTCACAGGCGAAGACCTCCACCTTAATTTTGTGTTGCGCCTGGAGTTCCTCCGCCAGGGCAGCGAGCACCGACTCGCGCCGGGCCACCAGCAACAGGTTGTGGCCCCCGGCGGCGAGTTCGCGGGCCAGGGCCGCACCGATGCCTTGGCTCGCGCCGGTAATTAGGGCGTAAGAGGATGGAGAAGGGGAGGGTAATGTCATAAGCGGATCCTTAAGGTGGGGGCTAAGCGACGTCCTGCCCATCGTACAAGCGCGGTAGCCCTGGGCTACGGCGGCAGGTGGGGCTGGGTATAGCGGGGGGAGGGGCCCTCGGAGAGAAGTTATAGCTAAAATGAGTACGAGGCTCGCATCGCTGCTGGTCAGCAAGT # Right flank : GCGCTCAGTCTGCCAATTCAGATCAGCGAGTGGAGACGGAGCCGACCCAGAAGCAAGCACCACAAGCGGTGACACAAAGATCCTCTACCCTAAGCCCCCCCCAGAAAGGAATCACCATGCGCGCACGCCCAATAGCCCCCTACCTCGCCCTTACCACCGTGGGGCTCGCCGTCCTCGTCACTAACCCCCGCAGCTGGACGCTTATCCCTTTGGGGATCGCCCTGGTCGCCACCGCTGCCTTTGATGCCTACCGGGCTACGCAACGATGAAGCTGCCCACTCACAATGAACATCCTCTCCTACGGACACTGGATCCGTACTAATCGGGTGTCTACTAGTCGAGGGTAACCCCAGTGGATCACGAGTTGGGCGATACGGTGTTCCCCGCGCTAGCGGGGATGAGCCGGTTGATTAAGGATGAACGCCAGCGTTGTGAGTCTGAGGTGCAAGGAGAACCTGAGGCGAGGGAACTGGCTGCCGAGAACACCAGGCTGCGCAGGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 163194-164017 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACMYD010000004.1 Corynebacterium sp. zg-331 Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 163194 29 100.0 32 ............................. TTTTAAAGACCGCCATTGAACAATACAACTAG 163255 29 96.6 32 ............................G CGCCTCCGGGAACGCAAGACTATGGGGGGATG 163316 29 100.0 34 ............................. CCCCCTAAAAGGAGACTGAGAGATGAAAGAGAGG 163379 29 96.6 32 ............................G AACATTTCCGCATTGCGCTTCCCGAAATCCCA 163440 29 100.0 32 ............................. ACATGAGGCAATGATGGCAGATGCTTGAAGGG 163501 29 100.0 32 ............................. ACATGAGGCAATGATGGCAGATGCTTGAAGGG 163562 29 96.6 32 ............................G CCGTATATCTATGTCGCGGACGAGGGGGAGTA 163623 29 96.6 32 ............................G AGACTGAACTTTGCTTTTCCTTGGGCTAGGCG 163684 29 100.0 32 ............................. AAGTCCAAGGAATCTCAGTGCAGGCAAAAACA 163745 29 100.0 32 ............................. TCTAGGTGCTCAGTCCACATTCCCAGGGCGTC 163806 29 100.0 32 ............................. AGTGGTAGCCCCATAGCGTCGATAGGACCACC 163867 29 96.6 32 ............................T CCCTGGTAGGTGGTCGTCATGCTCGCGTCCCC 163928 29 96.6 32 ............................G GTTTTACGTGCCCGCTGAGCAGACATTATTGA 163989 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 14 29 98.5 32 GTGTTCCCCGCGCTAGCGGGGATGAGCCC # Left flank : GCAGCGCACTGTGGATGAGGTCGCGCAGGAATACCCTGACGTGACCGTGGAATACAATCACATTGACGCCGCCACCATTTACATGGTGACCGACCCCCAGCGCTACGACGTGATTGTGACCGACAACCTCTTTGGTGACATCCTCACCGACCTTGCCGGAGCGATCACCGGAGGCATCGGACTGGCGGCCTCCGGTAACATCGACGCCTCCGGACAAAACCCCTCCATGTTCGAGCCGGTACACGGCTCCGCCCCCGATATTGCGGGGAAGGGTATTGCCGACCCCACGGCGGCAATCCTTTCCGCGGCGCTCATGTTGCGCCATTTGGGAGACGAGGAGGGCGCGAACCGCATCGAGAAAGCTGTGGCCGATGACGTGGCCCGGCGCTCGGGCGATCTTGTGACCTCGGAGGTAGGGGATAGGATCGCGGCAGTGGTATGACGCGGACAAGTTGTATCTAAAAAGTGCTAAGCTCTTGTATTACCGCAGGTAAGGAAGT # Right flank : CTGATGAAGGATGGGTGCGGGTCGAATTGTTCCGGTAAAAACTGCCGCGTGCAATCTGGGCAGTATTCACCGCAGAGCTAATCTGCTAGCTGCCCCGATGGGGCGAGGGTATGCACAGTGCAACGCTTTGGTTTCCCGACTACGGGGAGTTATGCAAATTACGTGGATCTTCGTCGGGCGTTGGAAAGGGGATCGGAATGGCTCGACGGAAAGGCGTTGTATGGGGTTAGCCACTCCGCCCATCCTCACCGGCTGAGCAGCTGGCGGGTCGCATTCGTCGTCGCCCTTGCCGCTTTCCACGCCGAGCACACTTCCGTTGCGGGATCGAGGATGCTCATGCAGGTCGGCAACTGAGTGTCGGGTCTGCTTTTTCGTGTTGCCGCAGTTCGCGTGCAGTCCAGCCACAGGTGTTGTGAGGGCTATTTCTTTGCCGCCACGAGCATCCTGTCGATGGAGGCGAGGACCTCATCGACGTAGGCCGGGTTGGCTCCGCGTTCCCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //