Array 1 7287-6464 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRV01000024.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_3966 NODE_24_length_76957_cov_2.15334, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7286 29 100.0 32 ............................. CGCTCGCAGTTCCTCTGGGTGCGACTCGGGGC 7225 29 100.0 32 ............................. CCCTGTTCGGCAAAATCCCGCCACGCTGGTTT 7164 29 100.0 32 ............................. GGGCGACCTCCGTTAAGCGGCGTGGCGCGATG 7103 29 100.0 32 ............................. GACATTGAGGCGCAGCGCTGGCTGATCCGGGG 7042 29 100.0 32 ............................. TGCTTATTGCGGTAAAGAAATCGGGAAAGAGG 6981 29 100.0 32 ............................. TTAGTCGCCAGCTCGCAGCCCAGCGAGGTGAG 6920 29 96.6 32 .............T............... ATCCCAATGATTATCCTGGCAGCCACGGATTA 6859 29 100.0 32 ............................. AAATACTCGTCATCAGCGCACGCTGCTGGTAA 6798 29 100.0 32 ............................. AATATTCCCGATCCCCAGCGGAGTGAGGGCGG 6737 29 100.0 32 ............................. AGGTAGTCGACCAGCTTTTTCCGCATCCCTGA 6676 29 96.6 32 ..................A.......... AGAGGCAGCAGCGTATATCCGTGGCTACGTTC 6615 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 6554 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 6493 29 93.1 0 A...........T................ | A [6466] ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTTAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAACAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24429-23424 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRV01000024.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_3966 NODE_24_length_76957_cov_2.15334, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24428 29 100.0 32 ............................. AAACCCGGTCAGAACCCGTTCAATGGGAAGCA 24367 29 100.0 32 ............................. GCAACTCATCACGATCACTTACAGGTTGGCTA 24306 29 100.0 32 ............................. TACTCATATGGATGCACCTCAACATTTACATC 24245 29 100.0 33 ............................. AAAATCTTTAACTATGTGCTGATGAACAGCGAA 24183 29 96.6 32 ............................A TGATCACAGAACTGACCGGGTACACCATACCT 24122 29 100.0 32 ............................. GTGAATATCTCCTCAGGCTTAGACTTAGCCGC 24061 29 100.0 32 ............................. TTACGTATCTGTCTAACCTGGAATCAATCGCT 24000 29 100.0 32 ............................. CGCACGCATGATGGCGCGATTACTTAATGTCA 23939 29 100.0 32 ............................. TCAACATCCTGAAATGCGACAATGCGCAACCC 23878 29 100.0 32 ............................. TAACTAACCAGATTGCAACTGGCGATGTGATT 23817 29 100.0 32 ............................. CCCCCGCATAAAAACCGGAGGCCGGAGGCCGA 23756 29 100.0 32 ............................. GGTGATTTTTTACGGGGGTTAGTATCATGGTA 23695 29 100.0 32 ............................. AGCAACTTTTACAGCCTTAACAACACGTTAAC 23634 29 100.0 32 ............................. ATTTGGAAAAACGCAAGAGCGAACTGAAATCA 23573 29 100.0 32 ............................. GTCAGCGAGAAACGCACGCCGACACACTCGCA 23512 29 100.0 32 ............................. CACGAGTGGCAAACTGATTTCGACGAAAAACC 23451 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //