Array 1 9335-6054 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKE01000019.1 Helicobacter cinaedi strain CCUG19504 entry19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 9334 36 100.0 30 .................................... GAAAATTTTTCTTATAAAGAGTATATTTCC 9268 36 100.0 30 .................................... TATGCTGGTGGACTTGATACAACTACGTCT 9202 36 100.0 30 .................................... CCTCTGCTGTTATAGACGCCGGTAACATTC 9136 36 100.0 30 .................................... AACTTTGAGCTTGTCCCTGAGTCAAAAGTT 9070 36 100.0 30 .................................... ATAAGTGTAGCCACATCTTATTCTTTCTAT 9004 36 100.0 30 .................................... GGCGTGTAGAAAGGTAACTTTTCAGTGATT 8938 36 100.0 30 .................................... CTCGTTTGGTTCTGGGTCTCTCTTTTCTCT 8872 36 100.0 30 .................................... TTCTGCTATCTGACACCATAGCGGTCAGTA 8806 36 100.0 30 .................................... AGTATATTGCTCCCGCGAAAGAATTTTTAA 8740 36 100.0 30 .................................... ATCGCCACGCTGTAATCGTTATCTGCCCCT 8674 36 100.0 30 .................................... AGTATATTGCTCCCGCGAAAGAATTTTTAA 8608 36 100.0 30 .................................... TCAAATTCAAGGCATATTGTGCCGGTAGCA 8542 36 100.0 30 .................................... CGGAGCTCAGTGGTATCGGTATGCAGGAAG 8476 36 100.0 30 .................................... CCTGTGGCGAATATGGATCGAAACGCGGTC 8410 36 100.0 31 .................................... ACCTTTTGCTCCCATATATCCGAGAACACCA 8343 36 100.0 30 .................................... CAGGCATTTGATGTTTCCGTTTTCTCGTTG 8277 36 100.0 30 .................................... TGATAGCACACTAGATTCTGCTAAGTGCTA 8211 36 100.0 30 .................................... GGTATGGATTCTATAATGACGACTTATTAT 8145 36 100.0 30 .................................... TAGTCAAACATGTCAAGCCCCCTCTTTTGC 8079 36 100.0 30 .................................... CCCGGAGCTTAGCGGAATCGGAATGCAAGA 8013 36 100.0 30 .................................... GATTGCTCGTGCGACACTGCATAATTTTAG 7947 36 100.0 30 .................................... TCCCCAGCGATGTTCTTCCATATCTTTCTC 7881 36 100.0 30 .................................... GTCTGCCGCGAAAATATGCAAGGAAGCGAG 7815 36 100.0 30 .................................... CCATTGCTTCTATTATCATATATGCCTTGT 7749 36 100.0 30 .................................... CCGGCAAGGTTGAAAACAATGCTGGAGGCA G [7736] 7682 36 100.0 30 .................................... GTCCGCATTGCTTTTCTTTTGAAATAAGTG 7616 36 100.0 31 .................................... CCGTTGCTAGAGCTTCCACGCAGCGTGGCAG 7549 36 100.0 30 .................................... AGTTTCATTTTGCGGATTTACCTTATAAAA 7483 36 100.0 30 .................................... ACCCCTATTTCACACATCTCGGCGTTTCTC 7417 36 100.0 30 .................................... TCATTTGCCCTAATTAATTCTACGCTGTCG 7351 36 100.0 31 .................................... CCGTTGCTAGAGCTTCCACGCAGCGTGGCAG 7284 36 100.0 30 .................................... GTCTCCCGGTTAATCAAGCTGAAATAGAAG 7218 36 100.0 30 .................................... TTCAAAAAATGAAAGAGGTTGCCACCTCTT 7152 36 100.0 30 .................................... GAGCAAAAGACGCTAACAAGTCTAGCGAGG 7086 36 100.0 33 .................................... AAAGACTTCTAGCAGATTCTAATTTTGAGATAA 7017 36 100.0 31 .................................... CCAAAAGATTTAAAACACGCGACCCGATAAG 6950 36 100.0 30 .................................... TTGATGTCGGTGCTTCCTTATAATATGTAT 6884 36 100.0 29 .................................... TGCTACTGCTTTGCAAAGAATGCAAGAAG 6819 36 94.4 30 CA.................................. CATTCGGAAACCGACACGTCGACTGCCGCG 6753 36 100.0 30 .................................... CAGCTCGGTTTTAATGCGATTGCTCCAATA 6687 36 100.0 30 .................................... CTAAAAATAGTGAACAGCAGAGACAGTATT 6621 36 100.0 30 .................................... GGTCTCGGCCAAGCGCTAGAATCTCAAATG 6555 36 100.0 30 .................................... ATCTCTAAAATCTCTAAAACAATCGCAAGG 6489 36 100.0 31 .................................... AAAAGGATAGAGTTTCTCTACAAGGATATGG 6422 36 100.0 31 .................................... GCGGTGATAATTTTGGCGGTTCTCAAGCTTC 6355 36 100.0 30 .................................... TTGGAGCTATCATCATACAAAGTTTGTTGA 6289 36 100.0 30 .................................... CCAGCGCCATCAATCATAAATATCGTATTC 6223 36 100.0 31 .................................... ACATTTGAATAATCTGCGTTCGTGTGTGTTA 6156 36 100.0 31 .................................... CCGATATTTCTTTCAGTTCTGTCACATTCCA 6089 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ================================= ================== 50 36 99.8 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGCTGTAAAAAAGGTGCTTCCAACTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAAAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCG # Right flank : TAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCACAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTGCAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 341-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKE01000141.1 Helicobacter cinaedi strain CCUG19504 entry141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 340 37 100.0 29 ..................................... CGTATAGGCTTAGATTATTTACAAAGCAT 274 37 100.0 29 ..................................... GCAAGAGTTTCTTTTAAATAAAGATAGTA 208 37 100.0 29 ..................................... AACTGCAAACTTGGAATCTACTATGCTTT 142 37 100.0 29 ..................................... AAATTACTCGGAGTCCTCGCTTCACGCGG 76 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 100.0 29 AGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : AAAATACCAAGATGATTTACTCTATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGT # Right flank : CAAAATGTGAAGTGTGTGGGAATAATATTAAGTTTTAGTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 24061-23761 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKE01000070.1 Helicobacter cinaedi strain CCUG19504 entry70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 24060 37 100.0 29 ..................................... AAATGTGAAGTGTGTGGGAATAATATTAA 23994 37 100.0 29 ..................................... CTTGCGGACGAGATTTCATAGAATCTTTG 23928 37 97.3 29 ....................................T TTTAAAATTTTAAGCCCTTGAGATACGCG 23862 37 100.0 29 ..................................... GCTCCTCTTTTGAAGCATTCTCATTTTTA 23796 35 86.5 0 ....................A--.........T.T.. | T [23767] ========== ====== ====== ====== ===================================== ============================= ================== 5 37 96.8 29 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAACA # Left flank : GCAACAAATTACTCGGAGTCCTCGCTTCACGCGG # Right flank : CTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAACACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCTAC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //