Array 1 31710-32257 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYP01000077.1 Propionibacterium freudenreichii strain CIRM-BIA 122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================================================== ================== 31710 26 100.0 48 .......................... TCNNNNNNNNNNTCCTCCGTGATCGTCCGGGCAACCCTGGAGAGCCAC 31784 26 100.0 44 .......................... TCATTGAGGCCACCAGCGAGTCCCCCGAGGATCCCGAGGGCCGT 31854 26 100.0 43 .......................... NNNNNNNNNNCCAGTCGAGGCCCACGTCGCTCCCCGGCGGCAG 31923 26 100.0 45 .......................... TCATTGAGGCGCCGGGCCGGTCCCGCCCACAGCCCACACCTGGAA 31994 26 100.0 45 .......................... TCATTGAGGCTGCGCGCGGATCTTGTCGGCGGCCTTCTGCGACAG 32065 26 100.0 48 .......................... TNNNNNNNNNNTTGGTACCCCTAGTTTTGAGTGGGTTGGATAGGGAGG 32139 26 84.6 67 ......................GGTG GTGTCATAGCGTCGAAGCAACACNNNNNNNNNNATTTCGGCGGGTGATCATTCTCGTGGCCCGCCAG 32232 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================================================== ================== 8 26 98.1 49 ATTGCCCCTCCTTCTGGAGGGGCCCT # Left flank : ATATAGGAATGACGGTCAGATGAGCCGACGAGATTCCCATTGCTTTCTGATCGCCTACGACGTGCCCGATGACCGTCGTCGCACCAGGTTGGCCACGGTACTGAAGGGCTACGGGGAGCGTGTGCAGTACAGCGTATTCATGGTTGATTGTCCGCCGTCACACCTGCTGGTGCTACGCCACGATCTCACCGACGCGATGGATATTGATGAGGACTCGGTGGTGATCTGCGACCTGGGCATGTCCACGTCGGCAGACGCCCAACGCATCACCTGGTTGGGCGGTCAGAGGTACCAGAGCGGCGGACGCAGCATCATCATCTGACGACCAGCGGCTCTGCGGCCCGGTTGTCACGCGGAGCCGCTCGCGTGATGTTTCCCCTTGTCACAAGCAGATTGCGCTGAAGGGGTCATCAATCCTCCACGCGCGAGCCATCCTTCTTCAGCACCGCTCGCAGGCGGCCGGTATAATGCCTAGTGGGAGCCCTGTTCCCACGCCCGCC # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTAATGAAAGCCAGATTATCAATCGTCTCGCATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTCGGCGCGGGCGTTGGTGACTGCACCTCCGGCCTCGAATTGCCCCTCCTTCTGGAGGGGCCCTTCA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 24222-18672 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYP01000076.1 Propionibacterium freudenreichii strain CIRM-BIA 122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================== ================== 24221 29 96.6 32 ............................T TTGATGGTTGACCTCGCTGAGACTGCCACGGC 24160 29 100.0 32 ............................. TCATGGACCGGCTCGGTCTACCGTCCGAAGAC 24099 29 96.6 32 ............................G TCTTCAGGGGAATGTTCGGCGATCGGCGCCAG 24038 29 96.6 32 ............................G TCGATCAGCGTGCCCGAAGGGGTTCTGCGTGA 23977 29 100.0 32 ............................. CAAGGCAACCCTGACATCACCCTTGAAGACGG 23916 29 100.0 32 ............................. ACCCGAGATTGATGTGTTGAGGGGCGAGATCA 23855 29 96.6 50 ............................T TGGACTGAGGAGGGCGCGAAGCCGACANNNNNNNNNNNNNNNNNNNNNNN 23776 29 89.7 32 NN..........................G TCAACGGTGGAGCAGTCCTTCTGCGCGAGCCG 23715 29 100.0 32 ............................. CTCAACACCCCCGCGGTGATCGGCGGACGGGC 23654 29 100.0 32 ............................. ACTGTTGCTACGCTTGTGTCACAAGGACAAAG 23593 29 100.0 32 ............................. ACTTGGCCTCACTCAGGAACACCCACCGAATC 23532 29 96.6 32 ............................T ATTGGATTCATCCCAAGTAGCTGTATTAATAC 23471 29 96.6 32 ............................G TGAGCACCGCAGACGACCTCGTGCGGTGGATG 23410 29 96.6 36 ............................G CACCCCGACGGGTGCGTTATCTTCTTCNNNNNNNNN 23345 29 93.1 32 N...........................G ACTGGCAGGCCCCCGACGCCTCGCCACAGTCC 23284 29 100.0 72 ............................. GCTGCGGTGCAGAGCACGGCCCTCGGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 23183 29 96.6 32 N............................ GGGGGACAGCTCAATCGGCCTTGTGAGTCCCT 23122 29 96.6 32 ............................G GAAATCACCTGCGAGGTAACCCACTGACACAG 23061 29 100.0 32 ............................. AGGAAATCGAATTGCTCCTTGGTGCGGGTTGC 23000 29 100.0 32 ............................. AGCCGGAACCCGACCCGGGTTTCCCGCCCGAC 22939 29 96.6 32 ............................A GCGTCACGGCAGCATGGAATACTCTTCAGACA 22878 29 100.0 32 ............................. GGTGACCTTATTTTGATCACATGGGAAGGACA 22817 29 96.6 53 ............................G GAGATCGAGAGTAGTGCCAACCTGCGTAATNNNNNNNNNNNNNNNNNNNNNNN 22735 29 93.1 32 N...........................T TTCAGGGGTTTATTCTATCGTGATTCCAGGTA 22674 29 100.0 32 ............................. GACATAACCATGTCCAGCGACAAGGCTCGTAA 22613 29 96.6 39 ............................G AAATCTTTGGACGTAATGAACCCGAGGGCCNNNNNNNNN 22545 29 93.1 32 N...........................T GCCACGACGACAATGGCTGACGGTAGCACAAT 22484 29 96.6 32 ............................G TACCACGAGATTGGAACGCTTTCGTCCAGTGT 22423 29 100.0 32 ............................. AGAATTGACCGTAAACGCTTTGAGCTGCATTA 22362 29 96.6 32 ............................G AAGGTCGTATAATGCTTATGAGGGTCCGTTGA 22301 29 100.0 32 ............................. GAGGCTGAGATCAAGCAGGCTTGCTATGATGA 22240 29 100.0 86 ............................. GACGCAATCAACAAACTGGCACCGGGTGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 22125 29 93.1 37 NN........................... GTCGGGCCGCCATTCTCCCACTGCTTCGNNNNNNNNN 22059 29 96.6 32 N............................ CTGACCTCGATCGGCATCGAGCATGCCGACGA 21998 29 100.0 32 ............................. CGGGGGAATCCTATTCTTGAACTCAAGTCCCG 21937 29 96.6 38 ............................G GTCACCGATTTCGCCACAGACACGGGAAGNNNNNNNNN 21870 29 93.1 32 N...........................G GGTCGGTTCTGCAATTCGATTTCCAGCAGCGT 21809 29 96.6 37 ............................G CCTCCGCTCATTATCAGGTGGAGACGGGTNNNNNNNN 21743 29 89.7 32 NN..........................G TTCTACTTTCTGGCGGCGAGGACCTTGACATG 21682 29 96.6 32 ............................G CGCATCCCGATGTCCGTGGCAGCTATGGCGAA 21621 29 96.6 32 ............................T TAGGTCCAAACTCAATGGCCTTTCTGATGAGG 21560 29 100.0 32 ............................. TTGACGATTGCGCCGGATGCGAGAGCGCCGGA 21499 29 96.6 32 ............................G GCGCGGCAACACGCCGCCCGACTCATAGCCGT 21438 29 100.0 32 ............................. AATCTCGGTGGTATTGGGTGCCACATAATTAG 21377 29 100.0 32 ............................. TATTACCTCGGAGGTGGTAATGCCGAGAATAG 21316 29 96.6 32 ............................T ATCTACAATATCCCTGTAAGTAGCATCCCAGT 21255 29 100.0 32 ............................. GCCTCGCTGAGCCCCGAAGCCCGCATGTCAGC 21194 29 100.0 32 ............................. GGCCGAAACAGACGGAAAGAATTGGAACTCCA 21133 29 100.0 32 ............................. GGCCGAAACAGACGGAAAGAATTGGAACTCCA 21072 29 100.0 37 ............................. CCCAATCGCGGCCAGTGGTATTCGCTGGNNNNNNNNN 21006 29 96.6 32 N............................ CCTGCGCATCGAACTGCGAAGCAAACAGCCCA 20945 29 100.0 32 ............................. ATCCACAGTCGTAGGCGGCGTACTGATATAAA 20884 29 96.6 32 ............................G TTCGCCTATTCCGAGGAGGGCAACCGGCTTGA 20823 29 100.0 32 ............................. GTCTCCAAAGCTACGGAGAAGGCTACACAACC 20762 29 100.0 32 ............................. ATCATCAGCAATCACCGTAGAAACAGCCCGAT 20701 29 96.6 32 ............................T TCTTCAACAACATCATGAAGACCGCCGGCGTC 20640 29 96.6 40 ............................G TCGAATCGTCGCGGACGATCTGGCCCTCANNNNNNNNNNG 20571 29 96.6 37 ............................T CGTCTCCTCCCAGCTCGACGTGTGGTGCANNNNNNNN 20505 29 93.1 32 NN........................... AAGCACATGGCATGGCATAACGTGGCGAATCA 20444 29 100.0 32 ............................. AAGGCAATGATTACCGTTGACACGGTACTCGG 20383 29 96.6 32 ............................G GCGTACGTTGAGCAAGTGGCAGAATGCACATG 20322 29 100.0 32 ............................. GTGGCGATCCGAAGCAACGATGTCATCTGGGG 20261 29 100.0 32 ............................. ACAGCGTCGGGGTACTACGTCGGCAACTGCAC 20200 29 100.0 32 ............................. ACCGGCCCCGCACCCCGCACCCTGACCGGCAT 20139 29 96.6 32 ............................G CCCTGTGCAGTCCCGGACATGCCCGAGGCTGT 20078 29 96.6 37 ............................G CCCGCGAATGTCTTGGTGGCGATGGAATNNNNNNNNN 20012 29 96.6 32 N............................ GCGAAGCAGGACAGCACGAGCAATTCCACGAC 19951 29 100.0 33 ............................. GACGATACGGTCGACGGCAGCTATGAGTGGTTC 19889 29 100.0 38 ............................. AGGGTGGGACCACTCGCCAGTCGTTGTTGNNNNNNNNN 19822 29 93.1 32 N...........................T TCACCAGCTCGGGACCCTGCTCGCCAACCCAC 19761 29 96.6 32 ............................T CCGATCTGGACGCCTCGCTGAGCCCCGAGGCC 19700 29 100.0 32 ............................. AACGCCAACAGCACGACGAAGCCGCTCGTTGA 19639 29 96.6 32 ............................G GGCCACAGCATGGCCGAGATCTCGGAGGCGCT 19578 29 96.6 32 ............................G ACCGACGCCAGGACAGGACCGATCGCCGAGAA 19517 29 96.6 32 ............................T ATAGGCCTCCGGGCCGGCCTCGGCCCACAGAA 19456 29 96.6 32 ............................G ATTTCAGCTGGCCGCCGCGCCACCTCGGATGC 19395 29 96.6 32 ............................G ACGACGAGCGACACCATCACCATCACCCGCGA 19334 29 100.0 32 ............................. ATTTCCGGATCGTCCATCCGGTGCCCGAAAAG 19273 29 96.6 32 ..............T.............. GGGCCGCGCACGCGTGGCGCGTCACCGAAGAG 19212 29 100.0 39 ............................. GCCCCGTCGGACGCTTTCGGCGTCGGAAGNNNNNNNNNN 19144 29 93.1 32 N...........................G CCACCGCAGCGCTCCAGCACATGCTCGCCGCC 19083 29 96.6 32 ............................G CGTGGACTGCGCAAGCTGATCTTCATCGCGCC 19022 29 96.6 32 ............................T GGTGATGTCTCCGCCGGGAAGCTGGGAGACCG 18961 29 96.6 50 ............................T GCAACGTTGTTGGAGATTGTTGCTGTATTNNNNNNNNNNNNNNNNNNNNN 18882 29 93.1 32 NN........................... GGTTCGGAATGGGTTCAATTGGCGAAAGTGTA 18821 29 96.6 32 ............................T TCTACGGGCAGTTGTGGGAAGACGACTGGGCA 18760 29 100.0 32 ............................. AACATAGCCATGGCCAGCAATAAGCGTCGTAA 18699 28 79.3 0 .....................-..GGGTT | ========== ====== ====== ====== ============================= ====================================================================================== ================== 88 29 97.2 34 GTTCTCCCCGCATACGCGGGGGTGATCCC # Left flank : CCTTGAGCGGGCGACGGTACGCGGACCTGCTCAGCCCGGCCAGACGGCACGCCATCCGCTCGCTCACCTGCAGTGTCCTGATCAGGTGCGAGACGGCGGCGCGGCGCCTGCCCGGGCCTAGAAGTTTCCCTCGGCCAGCTCCTTGAGCGCAGCCTTCTCCAGCTCCGCTTCGGCCAGCAACCGCTTGAGCGTGGCGTTCTGCTTCTCCAGCTCCCTGAGGCGCTTCGCGTCGTCGGCCTTCAGTCCGCCGTACTGGTTACGCCACCGGTAATACGTCTGCTCGGATATCCCAAGCTCCCGACACACCCCGGCGATGTCGCTGCCGTCGGCGAGCATCCTGGCGGCCTGCCCGAGCTTGCGGACGACCTGCTCCGGAGTGTGACGCTTCCTGCTGTTCGACATGATCTGACCAGTCTCCCTGCCCGCAACCACGGGCAACAGGACGACTCACACAACCACCGGACCTACCGAACGGGGTCAGCCCACCATATTTGGCGACC # Right flank : ACCCTGTTTTTTCGGACACCTGATGTGGCATGGCCGGTGGGTCGTGCGGGAAGGTGTTGTCATGGGTGTGGATCCGGAGCAGGTGCCGCGGAGGCGGCGGAAGTTCACTGCGGAGTACCGCCACGAGGCCGCGAGGCTGGTGCTGACGTCTGGTCGCACGATCGCGGACGTCGCGAAGGAATTGGGACTCGGTGAGCAGTTGCTGGGCAAATGGGTGCGTGCGCAGAAAGAGACAGCTGCTGGTGATTTGTTGAGCGATGACGAGCGGGCCGAGCTGAAACGGCTCCGGCGTGAGAACTCGCAGCTGCGGATGGACAACGAGTTCCTGGAAAAAGCGGCGGCCTTCTTCGCGTCGAAGCGTCGGTGAACGAGAAATACTCACTGATGCGCGCGGAGAAGGCACATTTCAGCGTCGTGCGAATGGCCCGGCTGCTGCATGTCTCACGGTCCGGGTATTACACGTGGGTGAAGACGAGCGAACACCCTGCCGCATCGCCTCG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCATACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26145-25506 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYP01000076.1 Propionibacterium freudenreichii strain CIRM-BIA 122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26144 29 100.0 32 ............................. TCATAATCCAACACCAGACTGTCCCAGAAAGG 26083 29 96.6 32 ............................G CACTCAAGCAGGTGCAGGGCGGTAATGGTGTG 26022 29 100.0 32 ............................. CCGCCCCACTGGCGCACCCGGCAGTGAGCTGC 25961 29 96.6 32 ............................G TCATGCGCAACACAAGTCTGCAAGCACGGAAG 25900 29 96.6 32 ............................G GTCCTCGCCGCCAGAAAGTAGAACATAGCCGG 25839 29 96.6 32 .........A................... GGCTTGTAGTTGACGAGTCACAGGCCAACGAT 25778 29 100.0 32 ............................. TGTCGAATAGCTGATAATCTGCCAATGTCGCG 25717 29 96.6 32 ............................T GTCACCCCACCACTGACCAGCCGGGAGACCGA 25656 29 100.0 32 ............................. ATACTCAACATCTTCTGGTTTCAGAAAAACAC 25595 29 100.0 32 ............................. CGGCCGTTAGCTTCGTCATTCCATGGTCGTAC 25534 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.5 32 GTTCTCCCCGCATACGCGGGGGTGATCCC # Left flank : CGTGCCGGGTGGCCGGTCATGGAGTGAACAGCCATGATGGTGTTGGTGCTCACTGCCTGCCCGGCCGGTTTGCGCGGGTTCGTGACGCGGTGGCTGCTGGAGATCAGCCCGGGAGTTTTTGTGGGCAAAGTCTCTGCGCGGGTGCGTGAAGCCATTTGGGCGCGGGTTGAGGACCTCTGCCAGGACGGACGAGCAATTCTGGTGCACACGGCGCGGAACGAGCAGGGCTTTGACTTCAAAGTACATAGGCACGATTGGGAAGTTGTTGATCTGGAGGGCCTCAAACTGATGCGTCGCCCCAGAACCCCGGATCGTGCGTCCAGTGGCATGCGCTCCGGATGGAGCAACGCTGCCAAGCGACGACGGTGGGGTCGCTGACTCGGAACGTCCTCGTATCGGCCTTGAGCGCCAGTAACATGCGTAGTCAGGANNNNNNNNNNTTCTCCCCGCATACGCGGGGGTGATCCCTCTCAGGTAATTGAATAGCTTGACCTGCTCCA # Right flank : AGTTGTGTCGTGTCGACGCCATTGGGCCGCCCCCTTCATTCGGTCCGGTCGCTCTGTGAGTCGTCGGTTTCGATTTGATGGGTGCACTGCCGAGCGTACTCGGCCGGGGGTAGATAGCCGAGCGATGAGTGCCGACGCTGATGGTTGTACTCGGTCTTCCAGTCGCCGATCACGACCTGAGCGTGCAGCAGTGAGTAGAAGCTGTTGATGTTGAGGCACTCGTCGCGGAGGCGGCTGTTGAACGATTCGACGTATCCGTTGTGCCAGGGCGAGCCGGGCGGAATGTAGAACAGGCCGGTGCGGGTACCCGCCCAGTCGGCCATCGCGTCGCTGATGAACTCGGGCCCGTTGTCGCTGCGGAGCACACCCGGTGCACCGCGGACGGCGACGAGCTCTTCGAGGTGGGCGGTGAGCCGGTCGGCGGTGATCGACCGCTCCACGAGCCCGCCGATGCATTCGCGGGTGTGCTCGTCGACGATGGAGCAGATCTTGATCGGGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCATACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 264-81 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYP01000078.1 Propionibacterium freudenreichii strain CIRM-BIA 122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 263 38 100.0 36 ...................................... CTTGAGCTGGGCGACGGACCCGGGGTTGTCAACTCC 189 38 100.0 33 ...................................... ACCCGAGCGGGAGCCCAGTCGCCCTTGCGGCGG 118 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 3 38 100.0 35 CGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATT # Left flank : TCGGTTCAATTGTAAAAAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATAACACGGCAACCCGCACCAAGGACCAGTTCGACTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGGGCCCCTCCAGAAGGAGGGGCAATCTTCGGGTCGATGGCCTCCACGGACACGGACCGCTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTTGGATTCAAGATGGGCAGCCAAGCGGCAGTTCAAAGTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTGGAGTCCGAAGTGTAATCAGTCGTCGTCAAGAANNNNNNNNNNAAGGGCCCCTCCAGAAGGAGGGGCAATTCGGTGTCTGAGGTCAACACGTTGTCCGCCTGGGCCNNNNNNNNNNNNNNNNNGAAGGGCCCCTCCAGAAGGAGGGGCAATCCCACAGCGGAGGATTCTGCACAATACCACCGGAGC # Right flank : TCGCTGGGTCGTTGGACCACGGCTCCAGCAGATGGACGCCTCAATGAAGGGCCCGGCGATGTCAAGGCGTCGAAGCAACAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.70,-14.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1916-2095 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYP01000078.1 Propionibacterium freudenreichii strain CIRM-BIA 122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1916 36 100.0 35 .................................... GCCAAAGTGTTCGAGCCTGGTCCTGCCGCCCTGTG 1987 36 77.8 37 ............................NNNNNNNN NNTGTAGTACCCATGTATCTGCCCCCATGGTCTAGAA 2060 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 92.6 36 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : CCTTCATTGAGGCACGGTCGTGGCCCCAACACCCGGCACCTGTCACCCGTATTGCCCCTCCTTCTGGAGGGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATCCCTCCCGATGAGAATGGGCATGGGCTCGGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTCGGATCACGGACTGATGGTCTTCTGACCGCAGAGAGGATTGCCCCTCCTTCTGGAGGGGCCCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGCAATCTGATGGCCGGATCGGCCAGCTCGTATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNCATGACTGGCGACCGGTTCGTGCGGATCGTGCTG # Right flank : TTGCGCCAGCTCTCGGAGACGATGGCGCCTTGACGTGGCGTTGCCCCTCTCCCCGGGCGAAGCCCTCCACCCGTTCAACGTCCCGAAACTCACGGAACTCCCGCCGGCGCCGAGAGCTAGACTCGCCATGAGAAGGTGGGAGGTAGGGCAGACGCCCAGCTGACCCACCTTCCCTTTTTCGCACCCCCGGTGGCGCCAAGAGCCACCGATTCCGTCCAACCGCCCACCCTCTCGTCCACCCGCGCGAGGACCCGTCACCCCGATCAGCGCTCACTGACAAGGCCACGTGGCCGCGCACGAGCCCTAGGCGTTTCCGGACCTGACAGCTGAAGCGCCCTGAGTTTGTTGGAGACTCC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //