Array 1 79235-76221 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXT01000044.1 Bifidobacterium breve strain BR-A29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 79234 33 100.0 35 ................................. TGGAAAGAATATGGTTTTATGAAGTGTTTGGTCTA 79166 33 100.0 34 ................................. TACAATCCGCAGACACTCGGCAACACGCTGTACC 79099 33 100.0 34 ................................. CTCGTCCGAGATGGGGTATCCGAGGTCTTCGAGG 79032 33 100.0 33 ................................. AACGATTCGAGTTCGGGGTCGGCCATCTCGTCG 78966 33 100.0 33 ................................. TATGTCCAGCTCATGCTCATGCTCAAATACGCC 78900 33 100.0 35 ................................. CCATTGTTGCGTGTTGTGGAATGGCGTGGTTTATT 78832 33 100.0 34 ................................. AGACTGTTTATCGCGCGTCTCACGCGCTTGCGTT 78765 33 100.0 35 ................................. CCTGATTTTAACGCGCCGAACGGTATCCCCGTAGT 78697 33 100.0 36 ................................. ACATTATCCACCGTAATGGCGGAATCAAGATGTATC 78628 33 100.0 36 ................................. ACTTCGGCGCGCGCCCATTCGAGCGTGTGCGTGCCT 78559 33 100.0 36 ................................. CCTGATTATGAATTTCGGACAACCAATAAAATAGCC 78490 33 100.0 32 ................................. GTCAAAATGTTGCGGGCGGACACCGATTACAG 78425 33 100.0 34 ................................. ACGCTGTCGGCGGTGGTGCTGACGGCGCGAACCT 78358 33 100.0 36 ................................. ACCCACAAGCGGGGCATGACCCATGAAGCGACCATG 78289 33 100.0 36 ................................. TCAACAGTTGCACCGTTATGGTGCCGTCATTGTTGG 78220 33 100.0 34 ................................. CTCAATGACGCCGCGAGTTTCTCGCCCTCGCTTT 78153 33 100.0 36 ................................. ATGGTGATGATGATTCCGAAGAACATGCTGATGACC 78084 33 100.0 32 ................................. TCGTTTCAAGCGTGGGAAAATCATTCGCGATG 78019 33 100.0 36 ................................. ATCCGCGAACACCGCGCGCTTATCGAAAGACTCAGA 77950 33 100.0 34 ................................. CGCTGGGACTTCGGGACGGTAAAAATCTGCCGTC 77883 33 100.0 32 ................................. GCCGACGAGGTCGGCAAATGGATACCAGCCGG 77818 33 100.0 35 ................................. TTATACCGGTGCAGGTACGTCGTGCAGACATCCAA 77750 33 100.0 35 ................................. CCCTCGTACATTTGTTCCAGCATGCCGTAGCGGAG 77682 33 100.0 35 ................................. CGTTTAACGAAATCAGGGGCTGCGACGAGCAGATT 77614 33 100.0 35 ................................. GGCTTATACCATGCGCATGTCTCCGCCGACGCCTC 77546 33 100.0 36 ................................. CGGTTCTGCGGGTGTCAGGCGTTGAATGCGTCGCTG 77477 33 100.0 35 ................................. ATCGGTGTTGCAGTCTATCCGTGACCATATCGCCA 77409 33 100.0 35 ................................. ACCGGCGCTCTGGCCAACATCAAGGCCGCGCTCGG 77341 33 100.0 35 ................................. CAGTCAACTTTGGTCATGTCTCCTAAATCTGGTAC 77273 33 100.0 34 ................................. AAGCCATTGAACGTCAACGGCGAGCCAGTGCCAG 77206 33 100.0 35 ................................. CGCATGGTCGTGCTCGACCCACCGCACTTGCGCAA 77138 33 100.0 36 ................................. AACCTCCTGTCCGACTATGGCGACGCGGTGGTGCGC 77069 33 100.0 34 ................................. CTTGGCGAGCGCGGCCTGTGTCTTGCGATGCCGT 77002 33 100.0 35 ................................. GTCGCAGGGTGGCGTGTCCGACAAGGACACCGCTC 76934 33 100.0 35 ................................. GATTCCCGTGTCTCGGGCCGTGCGCCCTGCGCCAT 76866 33 100.0 35 ................................. CTCCACGGGTCTGTCCGCCATGATTATGCCTCCGC 76798 33 100.0 34 ................................. CACGACACCACCATCCGATATTTCAACCGAGTCG 76731 33 100.0 36 ................................. TCCACTTGGATTGCATCAGCCGTGACACCGACCCGG 76662 33 100.0 36 ................................. CATTGTGAGTGTAATCGGCAGTGTTGGTTTTCCCAT 76593 33 100.0 35 ................................. CAAGTTCGTGAAAACATTACAAGCGGATACCGATT 76525 33 100.0 35 ................................. CCGATTCCATCCCTGAGGGTATCGCGCGCGACGCC 76457 33 100.0 35 ................................. AGTGGATGTAGCGGACGCCACTTCCGGCTGCGGCC 76389 33 100.0 34 ................................. AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC 76322 33 97.0 36 ....A............................ CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 76253 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 45 33 99.6 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : CGGACCTTTCCCGAATGGAACTAGAAGCACCATCAGGCTAAGGCCCACGGGTGGTCGGCATGCCTTTCCGCCTAAACCCGAAAAACCTTCGTGACTAAAACCTCAACTTCCTATTGAACAAAAACACAGAACAGAAAGGAGACGGCATGTATCTG # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGCCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCCGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 139568-141356 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXT01000006.1 Bifidobacterium breve strain BR-A29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 139568 33 100.0 36 ................................. ACCCAGTCCATGACGTTCTCGAACCCTCGCGGCGAA 139637 33 100.0 35 ................................. CTCGATCACCGAAAGAATCGGCGCGCTGTCAGAAC 139705 33 100.0 34 ................................. CGCGCCGATGGTCGCCGCGCCTCGGTCGATGACG 139772 33 100.0 34 ................................. GCCTCCAGCGACCGGAAGCCGCTCGGCACCGTCA 139839 33 100.0 36 ................................. GTCGCTGGTGTGGGACGGGTAGCTGGGGTTGGCTTT 139908 33 100.0 35 ................................. CAGCCGTACACGTCGGGCGGCACGCGCTGGTCGGT 139976 33 100.0 33 ................................. CACCGCATGCGAGATCGCGCCGGCACCCACGGC 140042 33 100.0 34 ................................. ACGTCCGCGTTACGCGGCAGAATTAACGTCTTAA 140109 33 100.0 32 ................................. AATGCATATGCCCCCGTATAAACGACAGGCCA 140174 33 100.0 34 ................................. GGGTGGCGGGCAGGGATGGCGGGTGCCGTCCTTG 140241 33 100.0 37 ................................. AGCGTCATCAAGGACACGTTCGAAAGCCTGTGCGCGA 140311 33 100.0 35 ................................. CCATGCAGGTCACCACCATCAACGACCAGCCCACC 140379 33 100.0 35 ................................. GGTGAGCTGCGCAAGTTCGTCGAACTGACGGCAGA 140447 33 100.0 35 ................................. GTCTATGCCAGCGAGGACACCGCCGGCAAATGGAA 140515 33 100.0 35 ................................. CCCTGCGGCTCCTGTGCCTCGTGTCGAGCGAGGCG 140583 33 100.0 36 ................................. GTGATGATGAATATGCCGAGCAAAAAACAAGGAACA 140652 33 100.0 34 ................................. GTCGATGACCAGTCACGCTTGCATGTCCAGCGTA 140719 33 100.0 34 ................................. ATCATGCGTCTTTTACTATTGGCTATTGTTGTTG 140786 33 100.0 33 ................................. ATCGGCACGATAGGCCATGGCGGCACCGTCACC 140852 33 100.0 38 ................................. ACCGTGCCCGACACGGCCGGCACGCTGGAATACGCGGA 140923 33 100.0 34 ................................. ACATATGGAAGGAAAACAAAATGGATGACGAAAC 140990 33 100.0 33 ................................. AGATACAGAGTGTTGCCAAGCGTCTGCGGGTTG 141056 33 100.0 34 ................................. TCCTTGACTAGATGGATTGGTTAACAATTGATTG 141123 33 100.0 34 ................................. CTAGACCCTAACGGCCTAATGGTAGCGGGGCATG 141190 33 100.0 34 ................................. CTAGACCCTAACGGCCTAATGGTAGCGGGGCATG 141257 33 100.0 34 ................................. ATCGACCTGCCGGGAAGCGGCGAACCATCGCCGG 141324 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 27 33 100.0 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : ATGCCCAGAACAGTGTTTTTAGTCAAGTCGGTGTTTCGTGTTTCGTCACTAATTTTTTTCGGTTTTCGGCATGAGGAGTGCCGGCCGGTGGTTTGTTTTACTGGTTGTCCGTCTTGCCGAACATGAGGGCTTGGCTGAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //