Array 1 1238-146 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQGB01000078.1 Neisseria meningitidis strain M40466 M40466_CHA5855A14_cleaned_ctg_8682, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1237 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 1171 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 1105 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 1039 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 973 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 907 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 841 36 100.0 30 .................................... CACCCTGATATTCCGCAACTCGATATACTG 775 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 709 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 643 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 577 36 100.0 30 .................................... AAATCCATTTATCGCCCACTCTTTCCGGCC 511 36 100.0 30 .................................... TGTAAATGAGGTTATTGAAGATGCAAAAAG 445 36 100.0 30 .................................... TTTTCCAAAGCGTAAAATCACATTCGGGGC 379 36 100.0 30 .................................... AACACTGATAGGGAATGTACCCTCGATAGT 313 36 100.0 30 .................................... GCGGGAACTGCAGCATTGTTGTTTGGTGGA 247 36 100.0 30 .................................... CGATGAATGTTTTGGCAGCAGACAGGTTCT 181 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TTAGCAATTCTGATTATTCTAGGGCGTGTCCTCAATTTAACTTAGCATGAATAATAGAGCAAGCCAAGTAAAGCATCGATTTAAAATTACGAGCTAATTTCTCATAGCGAGTAGCAATACTACGAAACTGCTTTAATCGTGCAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //